(74 nodes) Tetratricopeptide repeat network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_31059	TPR_REGION domain-containing protein. (474 aa)
	Cbn-sgt-1	CBN-SGT-1 protein. (339 aa)
	Cbn-ddl-3	CBN-DDL-3 protein. (401 aa)
	CAEBREN_08753	TPR_REGION domain-containing protein. (473 aa)
	CAEBREN_02864	TPR_REGION domain-containing protein. (795 aa)
	CAEBREN_04021	TPR_REGION domain-containing protein. (504 aa)
	CAEBREN_19711	PCI domain-containing protein. (496 aa)
	CAEBREN_03669	TTC5_OB domain-containing protein. (403 aa)
	CAEBREN_32099	TPR_REGION domain-containing protein. (127 aa)
	CAEBREN_30739	RPAP3_C domain-containing protein. (276 aa)
	CAEBREN_24821	Uncharacterized protein. (661 aa)
	CAEBREN_09093	TPR_REGION domain-containing protein. (670 aa)
	Cbn-rmd-2	CBN-RMD-2 protein. (379 aa)
	CAEBREN_14680	Uncharacterized protein. (1280 aa)
	CAEBREN_19535	TPR_REGION domain-containing protein. (207 aa)
	CAEBREN_29666	Uncharacterized protein. (500 aa)
	CAEBREN_30621	TPR_REGION domain-containing protein. (359 aa)
	Cbn-rpy-1	CBN-RPY-1 protein. (596 aa)
	Cbn-utx-1	CBN-UTX-1 protein. (1173 aa)
	CAEBREN_12604	PCI domain-containing protein. (496 aa)
	CAEBREN_24569	TTC5_OB domain-containing protein. (406 aa)
	CAEBREN_10835	Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family. (630 aa)
	CAEBREN_23239	F-box domain-containing protein. (1711 aa)
	CAEBREN_00406	TPR_REGION domain-containing protein. (320 aa)
	Cbn-fkb-6	Peptidylprolyl isomerase. (432 aa)
	CAEBREN_31069	ANK_REP_REGION domain-containing protein. (913 aa)
	CAEBREN_29421	Uncharacterized protein. (247 aa)
	Cbn-tag-315	CBN-TAG-315 protein. (1050 aa)
	Cbn-klc-1	CBN-KLC-1 protein. (544 aa)
	CAEBREN_00648	Uncharacterized protein. (425 aa)
	CAEBREN_03563	TPR_REGION domain-containing protein. (624 aa)
	CAEBREN_14075	TPR_REGION domain-containing protein. (554 aa)
	CAEBREN_29931	TPR_REGION domain-containing protein. (82 aa)
	CAEBREN_29062	Uncharacterized protein. (1350 aa)
	CAEBREN_00601	Uncharacterized protein. (298 aa)
	CAEBREN_22519	RPAP3_C domain-containing protein. (294 aa)
	Cbn-osm-5	CBN-OSM-5 protein. (825 aa)
	Cbn-ags-3	CBN-AGS-3 protein. (596 aa)
	CAEBREN_20045	TPR_REGION domain-containing protein. (878 aa)
	CAEBREN_14965	TPR_REGION domain-containing protein. (796 aa)
	CAEBREN_08483	TPR_REGION domain-containing protein. (754 aa)
	CAEBREN_20599	Uncharacterized protein. (528 aa)
	CAEBREN_09711	TPR_REGION domain-containing protein. (1297 aa)
	CAEBREN_05677	TPR_REGION domain-containing protein. (407 aa)
	Cbn-hip-1	CBN-HIP-1 protein. (232 aa)
	CAEBREN_04184	Uncharacterized protein. (1313 aa)
	CAEBREN_25959	Uncharacterized protein. (339 aa)
	CAEBREN_22204	Uncharacterized protein. (1118 aa)
	CAEBREN_04080	TPR_REGION domain-containing protein. (690 aa)
	CAEBREN_15893	TPR_REGION domain-containing protein. (769 aa)
	Cbn-nasp-1	CBN-NASP-1 protein. (352 aa)
	CAEBREN_04428	Uncharacterized protein. (540 aa)
	CAEBREN_06300	TPR_REGION domain-containing protein. (528 aa)
	CAEBREN_05971	TPR_REGION domain-containing protein. (536 aa)
	CAEBREN_05652	Uncharacterized protein. (850 aa)
	Cbn-mat-3	CBN-MAT-3 protein. (687 aa)
	CAEBREN_14621	TPR_REGION domain-containing protein. (961 aa)
	CAEBREN_03767	Uncharacterized protein. (578 aa)
	CAEBREN_14587	Uncharacterized protein. (957 aa)
	CAEBREN_01897	TPR_REGION domain-containing protein. (919 aa)
	Cbn-pph-5	CBN-PPH-5 protein. (495 aa)
	CAEBREN_16086	TPR_REGION domain-containing protein. (208 aa)
	CAEBREN_09284	Uncharacterized protein. (529 aa)
	CAEBREN_19640	TPR_REGION domain-containing protein. (294 aa)
	Cbn-dnj-7	CBN-DNJ-7 protein. (495 aa)
	Cbn-ogt-1	CBN-OGT-1 protein. (1171 aa)
	Cbn-klc-2	CBN-KLC-2 protein. (528 aa)
	CAEBREN_31944	TPR_REGION domain-containing protein. (310 aa)
	CAEBREN_26405	TPR_REGION domain-containing protein. (471 aa)
	CAEBREN_14688	Uncharacterized protein. (425 aa)
	CAEBREN_29399	TPR_REGION domain-containing protein. (662 aa)
	CAEBREN_03853	TPR_REGION domain-containing protein. (342 aa)
	CAEBREN_03357	Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family. (630 aa)
	CAEBREN_10703	Uncharacterized protein. (578 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00406	CAEBREN_00648	G0NKQ6	G0NAW1	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.568
CAEBREN_00406	CAEBREN_03563	G0NKQ6	G0NB27	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.414
CAEBREN_00406	CAEBREN_09093	G0NKQ6	G0NYZ9	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.725
CAEBREN_00406	CAEBREN_12604	G0NKQ6	G0NML9	TPR_REGION domain-containing protein.	PCI domain-containing protein.	0.471
CAEBREN_00406	CAEBREN_14621	G0NKQ6	G0MYS1	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.480
CAEBREN_00406	CAEBREN_14688	G0NKQ6	G0PKI4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.568
CAEBREN_00406	CAEBREN_19711	G0NKQ6	G0P5H7	TPR_REGION domain-containing protein.	PCI domain-containing protein.	0.471
CAEBREN_00406	CAEBREN_24821	G0NKQ6	G0P011	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.830
CAEBREN_00406	CAEBREN_29399	G0NKQ6	G0PIR1	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.788
CAEBREN_00406	Cbn-dnj-7	G0NKQ6	G0N525	TPR_REGION domain-containing protein.	CBN-DNJ-7 protein.	0.441
CAEBREN_00406	Cbn-fkb-6	G0NKQ6	G0NKP6	TPR_REGION domain-containing protein.	Peptidylprolyl isomerase.	0.955
CAEBREN_00406	Cbn-mat-3	G0NKQ6	G0MYR7	TPR_REGION domain-containing protein.	CBN-MAT-3 protein.	0.725
CAEBREN_00406	Cbn-ogt-1	G0NKQ6	G0N5N0	TPR_REGION domain-containing protein.	CBN-OGT-1 protein.	0.577
CAEBREN_00406	Cbn-pph-5	G0NKQ6	G0N371	TPR_REGION domain-containing protein.	CBN-PPH-5 protein.	0.552
CAEBREN_00648	CAEBREN_00406	G0NAW1	G0NKQ6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.568
CAEBREN_00648	CAEBREN_03669	G0NAW1	G0P5G3	Uncharacterized protein.	TTC5_OB domain-containing protein.	0.542
CAEBREN_00648	CAEBREN_03853	G0NAW1	G0PIL6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.570
CAEBREN_00648	CAEBREN_09093	G0NAW1	G0NYZ9	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.725
CAEBREN_00648	CAEBREN_12604	G0NAW1	G0NML9	Uncharacterized protein.	PCI domain-containing protein.	0.757
CAEBREN_00648	CAEBREN_16086	G0NAW1	G0NH91	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.560

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