(8 nodes) Dynein heavy chain network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-che-3	CBN-CHE-3 protein. (1825 aa)
	CAEBREN_30051	Dynein_C domain-containing protein. (318 aa)
	CAEBREN_28930	Uncharacterized protein. (2028 aa)
	CAEBREN_32344	Uncharacterized protein. (2243 aa)
	CAEBREN_20999	Uncharacterized protein. (1126 aa)
	CAEBREN_29886	Uncharacterized protein. (2099 aa)
	CAEBREN_32350	DHC_N1 domain-containing protein. (995 aa)
	CAEBREN_30500	Uncharacterized protein. (1264 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_20999	CAEBREN_28930	G0P9D0	G0PIT0	Uncharacterized protein.	Uncharacterized protein.	0.695
CAEBREN_20999	CAEBREN_29886	G0P9D0	G0PBU8	Uncharacterized protein.	Uncharacterized protein.	0.942
CAEBREN_20999	CAEBREN_30500	G0P9D0	G0P1G3	Uncharacterized protein.	Uncharacterized protein.	0.981
CAEBREN_20999	CAEBREN_32344	G0P9D0	G0P5Q1	Uncharacterized protein.	Uncharacterized protein.	0.981
CAEBREN_20999	CAEBREN_32350	G0P9D0	G0P9D1	Uncharacterized protein.	DHC_N1 domain-containing protein.	0.942
CAEBREN_20999	Cbn-che-3	G0P9D0	G0NCT2	Uncharacterized protein.	CBN-CHE-3 protein.	0.695
CAEBREN_28930	CAEBREN_20999	G0PIT0	G0P9D0	Uncharacterized protein.	Uncharacterized protein.	0.695
CAEBREN_28930	CAEBREN_29886	G0PIT0	G0PBU8	Uncharacterized protein.	Uncharacterized protein.	0.968
CAEBREN_28930	CAEBREN_30051	G0PIT0	G0PBU9	Uncharacterized protein.	Dynein_C domain-containing protein.	0.695
CAEBREN_28930	CAEBREN_30500	G0PIT0	G0P1G3	Uncharacterized protein.	Uncharacterized protein.	0.948
CAEBREN_28930	CAEBREN_32344	G0PIT0	G0P5Q1	Uncharacterized protein.	Uncharacterized protein.	0.949
CAEBREN_28930	CAEBREN_32350	G0PIT0	G0P9D1	Uncharacterized protein.	DHC_N1 domain-containing protein.	0.901
CAEBREN_29886	CAEBREN_20999	G0PBU8	G0P9D0	Uncharacterized protein.	Uncharacterized protein.	0.942
CAEBREN_29886	CAEBREN_28930	G0PBU8	G0PIT0	Uncharacterized protein.	Uncharacterized protein.	0.968
CAEBREN_29886	CAEBREN_30051	G0PBU8	G0PBU9	Uncharacterized protein.	Dynein_C domain-containing protein.	0.899
CAEBREN_29886	CAEBREN_30500	G0PBU8	G0P1G3	Uncharacterized protein.	Uncharacterized protein.	0.824
CAEBREN_29886	CAEBREN_32344	G0PBU8	G0P5Q1	Uncharacterized protein.	Uncharacterized protein.	0.824
CAEBREN_29886	Cbn-che-3	G0PBU8	G0NCT2	Uncharacterized protein.	CBN-CHE-3 protein.	0.968
CAEBREN_30051	CAEBREN_28930	G0PBU9	G0PIT0	Dynein_C domain-containing protein.	Uncharacterized protein.	0.695
CAEBREN_30051	CAEBREN_29886	G0PBU9	G0PBU8	Dynein_C domain-containing protein.	Uncharacterized protein.	0.899

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