(12 nodes) HECT, E3 ligase catalytic domain network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-oxi-1	CBN-OXI-1 protein. (1072 aa)
	CAEBREN_00888	Uncharacterized protein. (890 aa)
	CAEBREN_31965	Uncharacterized protein. (1089 aa)
	CAEBREN_14277	Uncharacterized protein. (4174 aa)
	CAEBREN_25264	Uncharacterized protein. (4140 aa)
	CAEBREN_01506	HECT domain-containing protein. (792 aa)
	CAEBREN_25739	E3 ubiquitin-protein ligase. (798 aa)
	CAEBREN_28613	HECT domain-containing protein. (503 aa)
	CAEBREN_12441	HECT domain-containing protein. (755 aa)
	CAEBREN_06231	Uncharacterized protein. (2922 aa)
	CAEBREN_08677	E3 ubiquitin-protein ligase. (747 aa)
	CAEBREN_05152	E3 ubiquitin-protein ligase. (798 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00888	CAEBREN_05152	G0MKQ5	G0MM60	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.768
CAEBREN_00888	CAEBREN_14277	G0MKQ5	G0P8A8	Uncharacterized protein.	Uncharacterized protein.	0.422
CAEBREN_00888	CAEBREN_25264	G0MKQ5	G0PEZ8	Uncharacterized protein.	Uncharacterized protein.	0.422
CAEBREN_00888	CAEBREN_25739	G0MKQ5	G0NV82	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.768
CAEBREN_01506	CAEBREN_12441	G0PFL1	G0NU96	HECT domain-containing protein.	HECT domain-containing protein.	0.542
CAEBREN_01506	CAEBREN_14277	G0PFL1	G0P8A8	HECT domain-containing protein.	Uncharacterized protein.	0.500
CAEBREN_01506	CAEBREN_25264	G0PFL1	G0PEZ8	HECT domain-containing protein.	Uncharacterized protein.	0.500
CAEBREN_01506	Cbn-oxi-1	G0PFL1	G0ML15	HECT domain-containing protein.	CBN-OXI-1 protein.	0.699
CAEBREN_05152	CAEBREN_00888	G0MM60	G0MKQ5	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.768
CAEBREN_05152	CAEBREN_08677	G0MM60	G0MNP3	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.939
CAEBREN_05152	CAEBREN_14277	G0MM60	G0P8A8	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.481
CAEBREN_05152	CAEBREN_25264	G0MM60	G0PEZ8	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.481
CAEBREN_06231	CAEBREN_14277	G0MXS8	G0P8A8	Uncharacterized protein.	Uncharacterized protein.	0.465
CAEBREN_06231	CAEBREN_25264	G0MXS8	G0PEZ8	Uncharacterized protein.	Uncharacterized protein.	0.465
CAEBREN_08677	CAEBREN_05152	G0MNP3	G0MM60	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.939
CAEBREN_08677	CAEBREN_14277	G0MNP3	G0P8A8	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.422
CAEBREN_08677	CAEBREN_25264	G0MNP3	G0PEZ8	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.422
CAEBREN_08677	CAEBREN_25739	G0MNP3	G0NV82	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.939
CAEBREN_12441	CAEBREN_01506	G0NU96	G0PFL1	HECT domain-containing protein.	HECT domain-containing protein.	0.542
CAEBREN_12441	CAEBREN_14277	G0NU96	G0P8A8	HECT domain-containing protein.	Uncharacterized protein.	0.489

page 1 of 3

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About