(68 nodes) Fibronectin type III superfamily network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_19129	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (610 aa)
	CAEBREN_08853	Uncharacterized protein. (974 aa)
	CAEBREN_29894	Uncharacterized protein. (1897 aa)
	CAEBREN_28233	Uncharacterized protein. (900 aa)
	CAEBREN_19597	Uncharacterized protein. (1327 aa)
	Cbn-unc-89	CBN-UNC-89 protein. (2332 aa)
	CAEBREN_16950	Uncharacterized protein. (1325 aa)
	Cbn-hcf-1	CBN-HCF-1 protein. (775 aa)
	Cbn-rig-4	CBN-RIG-4 protein. (2322 aa)
	CAEBREN_00942	Uncharacterized protein. (649 aa)
	CAEBREN_06753	Uncharacterized protein. (2495 aa)
	CAEBREN_05905	Uncharacterized protein. (1299 aa)
	CAEBREN_30513	Uncharacterized protein. (1457 aa)
	CAEBREN_08229	Uncharacterized protein. (1851 aa)
	CAEBREN_31749	Uncharacterized protein. (841 aa)
	CAEBREN_17142	Uncharacterized protein. (1101 aa)
	CAEBREN_30094	Uncharacterized protein. (757 aa)
	CAEBREN_30835	Fibronectin type-III domain-containing protein. (434 aa)
	CAEBREN_32760	EGF_CA domain-containing protein. (387 aa)
	CAEBREN_29701	Uncharacterized protein. (483 aa)
	Cbn-syg-2	CBN-SYG-2 protein. (1222 aa)
	CAEBREN_08102	Uncharacterized protein. (1070 aa)
	CAEBREN_02598	Uncharacterized protein. (361 aa)
	Cbn-twk-30	CBN-TWK-30 protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (634 aa)
	CAEBREN_32614	Uncharacterized protein. (289 aa)
	CAEBREN_30264	Uncharacterized protein. (1445 aa)
	Cbn-jac-1	CBN-JAC-1 protein. (1249 aa)
	CAEBREN_29003	Uncharacterized protein. (1303 aa)
	CAEBREN_19421	Uncharacterized protein. (885 aa)
	CAEBREN_21692	Uncharacterized protein. (1443 aa)
	CAEBREN_20173	Uncharacterized protein. (413 aa)
	CAEBREN_07253	Uncharacterized protein. (2095 aa)
	CAEBREN_06773	Uncharacterized protein. (1207 aa)
	Cbn-unc-40	CBN-UNC-40 protein. (1420 aa)
	CAEBREN_22128	Uncharacterized protein. (1325 aa)
	CAEBREN_21834	Uncharacterized protein. (1411 aa)
	CAEBREN_00320	Uncharacterized protein. (2322 aa)
	CAEBREN_31755	Uncharacterized protein. (765 aa)
	CAEBREN_28794	Uncharacterized protein; Belongs to the glycosyl hydrolase 18 family. (1168 aa)
	CAEBREN_07559	Uncharacterized protein. (482 aa)
	CAEBREN_32054	Uncharacterized protein. (1108 aa)
	CAEBREN_28154	Uncharacterized protein. (4534 aa)
	Cbn-daf-2	CBN-DAF-2 protein. (1937 aa)
	CAEBREN_28647	Uncharacterized protein. (575 aa)
	CAEBREN_29721	Uncharacterized protein. (5213 aa)
	CAEBREN_14021	Uncharacterized protein. (13559 aa)
	CAEBREN_08431	Uncharacterized protein. (1343 aa)
	CAEBREN_31711	Uncharacterized protein. (483 aa)
	CAEBREN_29935	Uncharacterized protein. (1035 aa)
	CAEBREN_11960	Uncharacterized protein. (1186 aa)
	CAEBREN_13678	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (629 aa)
	CAEBREN_32191	Uncharacterized protein. (619 aa)
	CAEBREN_11825	Uncharacterized protein. (894 aa)
	Cbn-madd-2	CBN-MADD-2 protein. (752 aa)
	Cbn-ptp-3	CBN-PTP-3 protein. (2285 aa)
	CAEBREN_15845	Uncharacterized protein. (22383 aa)
	Cbn-dep-1	CBN-DEP-1 protein. (1392 aa)
	CAEBREN_00621	Uncharacterized protein. (413 aa)
	CAEBREN_04182	Uncharacterized protein. (320 aa)
	Cbn-sax-3	CBN-SAX-3 protein. (1267 aa)
	CAEBREN_31650	Uncharacterized protein. (617 aa)
	CAEBREN_00720	Uncharacterized protein. (156 aa)
	CAEBREN_29831	Uncharacterized protein. (678 aa)
	CAEBREN_32276	Uncharacterized protein. (855 aa)
	CAEBREN_31457	Uncharacterized protein. (560 aa)
	CAEBREN_04806	Uncharacterized protein. (4413 aa)
	Cbn-kal-1	CBN-KAL-1 protein. (716 aa)
	CAEBREN_09713	Uncharacterized protein. (1207 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00320	CAEBREN_00942	G0P274	G0NFD4	Uncharacterized protein.	Uncharacterized protein.	0.586
CAEBREN_00320	CAEBREN_08853	G0P274	G0PIQ0	Uncharacterized protein.	Uncharacterized protein.	0.455
CAEBREN_00320	CAEBREN_11960	G0P274	G0P8A1	Uncharacterized protein.	Uncharacterized protein.	0.533
CAEBREN_00320	CAEBREN_16950	G0P274	G0NGA5	Uncharacterized protein.	Uncharacterized protein.	0.533
CAEBREN_00320	CAEBREN_19421	G0P274	G0MQ02	Uncharacterized protein.	Uncharacterized protein.	0.568
CAEBREN_00320	CAEBREN_21692	G0P274	G0MNK6	Uncharacterized protein.	Uncharacterized protein.	0.413
CAEBREN_00320	CAEBREN_22128	G0P274	G0P4Q9	Uncharacterized protein.	Uncharacterized protein.	0.533
CAEBREN_00320	CAEBREN_28154	G0P274	G0PEH1	Uncharacterized protein.	Uncharacterized protein.	0.748
CAEBREN_00320	CAEBREN_28233	G0P274	G0PHY0	Uncharacterized protein.	Uncharacterized protein.	0.568
CAEBREN_00320	CAEBREN_30513	G0P274	G0NAN6	Uncharacterized protein.	Uncharacterized protein.	0.542
CAEBREN_00320	CAEBREN_31749	G0P274	G0N7L5	Uncharacterized protein.	Uncharacterized protein.	0.802
CAEBREN_00320	CAEBREN_32191	G0P274	G0NUR1	Uncharacterized protein.	Uncharacterized protein.	0.455
CAEBREN_00320	Cbn-ptp-3	G0P274	G0MVH3	Uncharacterized protein.	CBN-PTP-3 protein.	0.476
CAEBREN_00320	Cbn-sax-3	G0P274	G0M7N3	Uncharacterized protein.	CBN-SAX-3 protein.	0.769
CAEBREN_00320	Cbn-syg-2	G0P274	G0MB96	Uncharacterized protein.	CBN-SYG-2 protein.	0.769
CAEBREN_00320	Cbn-unc-40	G0P274	G0P6F4	Uncharacterized protein.	CBN-UNC-40 protein.	0.413
CAEBREN_00320	Cbn-unc-89	G0P274	G0NJP5	Uncharacterized protein.	CBN-UNC-89 protein.	0.748
CAEBREN_00621	CAEBREN_08229	G0NMJ3	G0N858	Uncharacterized protein.	Uncharacterized protein.	0.418
CAEBREN_00621	CAEBREN_08853	G0NMJ3	G0PIQ0	Uncharacterized protein.	Uncharacterized protein.	0.517
CAEBREN_00621	CAEBREN_28154	G0NMJ3	G0PEH1	Uncharacterized protein.	Uncharacterized protein.	0.825

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