(41 nodes) High mobility group box domain superfamily network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_15844	HMG box domain-containing protein. (152 aa)
	CAEBREN_31697	Uncharacterized protein. (2020 aa)
	CAEBREN_25924	HMG box domain-containing protein. (288 aa)
	CAEBREN_16260	HMG box domain-containing protein. (620 aa)
	CAEBREN_28577	HMG box domain-containing protein. (435 aa)
	CAEBREN_22571	Uncharacterized protein. (310 aa)
	CAEBREN_04942	HMG box domain-containing protein. (262 aa)
	Cbn-egl-13	CBN-EGL-13 protein. (538 aa)
	CAEBREN_11452	HMG box domain-containing protein. (214 aa)
	Cbn-sox-3	CBN-SOX-3 protein. (212 aa)
	CAEBREN_23010	HMG box domain-containing protein. (149 aa)
	CAEBREN_31488	L-type lectin-like domain-containing protein. (88 aa)
	CAEBREN_25379	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (699 aa)
	CAEBREN_09141	HMG box domain-containing protein. (342 aa)
	Cbn-set-16	CBN-SET-16 protein. (2498 aa)
	Cbn-hmg-1.2	CBN-HMG-1.2 protein. (235 aa)
	CAEBREN_12949	HMG box domain-containing protein. (906 aa)
	CAEBREN_21926	HMG box domain-containing protein. (930 aa)
	CAEBREN_00724	Uncharacterized protein. (148 aa)
	CAEBREN_25334	Uncharacterized protein. (301 aa)
	CAEBREN_09380	Uncharacterized protein. (113 aa)
	CAEBREN_04053	HMG box domain-containing protein. (97 aa)
	Cbn-gei-3	CBN-GEI-3 protein. (1111 aa)
	CAEBREN_21701	HMG box domain-containing protein. (243 aa)
	CAEBREN_02331	HMG box domain-containing protein. (738 aa)
	CAEBREN_00160	HMG box domain-containing protein. (612 aa)
	CAEBREN_19037	Mcl1_mid domain-containing protein. (1024 aa)
	Cbn-pbrm-1	CBN-PBRM-1 protein. (1918 aa)
	CAEBREN_00131	HMG box domain-containing protein. (308 aa)
	CAEBREN_23998	HMG box domain-containing protein. (429 aa)
	CAEBREN_04801	HMG box domain-containing protein. (170 aa)
	CAEBREN_25531	HMG box domain-containing protein. (173 aa)
	Cbn-sox-2	CBN-SOX-2 protein. (284 aa)
	CAEBREN_29316	HMG box domain-containing protein. (415 aa)
	CAEBREN_07206	HMG box domain-containing protein. (194 aa)
	CAEBREN_12314	HMG box domain-containing protein. (414 aa)
	CAEBREN_29074	HMG box domain-containing protein. (308 aa)
	CAEBREN_25722	HMG box domain-containing protein. (332 aa)
	CAEBREN_07368	HMG box domain-containing protein. (989 aa)
	CAEBREN_13162	HMG box domain-containing protein. (435 aa)
	CAEBREN_22152	HMG box domain-containing protein. (174 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_00131	CAEBREN_07368	G0NH69	G0P0V1	HMG box domain-containing protein.	HMG box domain-containing protein.	0.705
CAEBREN_00131	CAEBREN_11452	G0NH69	G0M7N8	HMG box domain-containing protein.	HMG box domain-containing protein.	0.601
CAEBREN_00131	CAEBREN_13162	G0NH69	G0P0V4	HMG box domain-containing protein.	HMG box domain-containing protein.	0.726
CAEBREN_00131	CAEBREN_25722	G0NH69	G0NW81	HMG box domain-containing protein.	HMG box domain-containing protein.	0.660
CAEBREN_00131	CAEBREN_25924	G0NH69	G0PGR2	HMG box domain-containing protein.	HMG box domain-containing protein.	0.676
CAEBREN_00131	CAEBREN_28577	G0NH69	G0PKP4	HMG box domain-containing protein.	HMG box domain-containing protein.	0.726
CAEBREN_00131	Cbn-egl-13	G0NH69	G0M6I1	HMG box domain-containing protein.	CBN-EGL-13 protein.	0.640
CAEBREN_00131	Cbn-sox-2	G0NH69	G0NL03	HMG box domain-containing protein.	CBN-SOX-2 protein.	0.604
CAEBREN_00131	Cbn-sox-3	G0NH69	G0MB92	HMG box domain-containing protein.	CBN-SOX-3 protein.	0.583
CAEBREN_04053	CAEBREN_25379	G0MQ65	G0MG00	HMG box domain-containing protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.683
CAEBREN_04942	CAEBREN_07368	G0PM71	G0P0V1	HMG box domain-containing protein.	HMG box domain-containing protein.	0.705
CAEBREN_04942	CAEBREN_11452	G0PM71	G0M7N8	HMG box domain-containing protein.	HMG box domain-containing protein.	0.557
CAEBREN_04942	CAEBREN_13162	G0PM71	G0P0V4	HMG box domain-containing protein.	HMG box domain-containing protein.	0.705
CAEBREN_04942	CAEBREN_25722	G0PM71	G0NW81	HMG box domain-containing protein.	HMG box domain-containing protein.	0.640
CAEBREN_04942	CAEBREN_25924	G0PM71	G0PGR2	HMG box domain-containing protein.	HMG box domain-containing protein.	0.666
CAEBREN_04942	CAEBREN_28577	G0PM71	G0PKP4	HMG box domain-containing protein.	HMG box domain-containing protein.	0.705
CAEBREN_04942	Cbn-egl-13	G0PM71	G0M6I1	HMG box domain-containing protein.	CBN-EGL-13 protein.	0.640
CAEBREN_04942	Cbn-sox-2	G0PM71	G0NL03	HMG box domain-containing protein.	CBN-SOX-2 protein.	0.557
CAEBREN_04942	Cbn-sox-3	G0PM71	G0MB92	HMG box domain-containing protein.	CBN-SOX-3 protein.	0.557
CAEBREN_07368	CAEBREN_00131	G0P0V1	G0NH69	HMG box domain-containing protein.	HMG box domain-containing protein.	0.705

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