(9 nodes) Intraflagellar transport protein 122/121 homolog network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_12938	Uncharacterized protein. (1064 aa)
	Cbn-ifta-1	CBN-IFTA-1 protein. (1074 aa)
	CAEBREN_28865	Uncharacterized protein. (1235 aa)
	CAEBREN_14741	Uncharacterized protein. (1038 aa)
	CAEBREN_08468	ANAPC4_WD40 domain-containing protein. (523 aa)
	Cbn-daf-10	CBN-DAF-10 protein. (1239 aa)
	CAEBREN_28014	Uncharacterized protein. (1044 aa)
	CAEBREN_15336	ANAPC4_WD40 domain-containing protein. (660 aa)
	CAEBREN_07258	Uncharacterized protein. (953 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_07258	CAEBREN_12938	G0P892	G0NQD5	Uncharacterized protein.	Uncharacterized protein.	0.940
CAEBREN_07258	CAEBREN_28014	G0P892	G0NQD6	Uncharacterized protein.	Uncharacterized protein.	0.939
CAEBREN_07258	Cbn-daf-10	G0P892	G0NQD4	Uncharacterized protein.	CBN-DAF-10 protein.	0.937
CAEBREN_08468	CAEBREN_12938	G0NPA7	G0NQD5	ANAPC4_WD40 domain-containing protein.	Uncharacterized protein.	0.944
CAEBREN_08468	CAEBREN_28014	G0NPA7	G0NQD6	ANAPC4_WD40 domain-containing protein.	Uncharacterized protein.	0.944
CAEBREN_08468	Cbn-daf-10	G0NPA7	G0NQD4	ANAPC4_WD40 domain-containing protein.	CBN-DAF-10 protein.	0.942
CAEBREN_12938	CAEBREN_07258	G0NQD5	G0P892	Uncharacterized protein.	Uncharacterized protein.	0.940
CAEBREN_12938	CAEBREN_08468	G0NQD5	G0NPA7	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.944
CAEBREN_12938	CAEBREN_14741	G0NQD5	G0N4X9	Uncharacterized protein.	Uncharacterized protein.	0.933
CAEBREN_12938	CAEBREN_15336	G0NQD5	G0NSP0	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.945
CAEBREN_12938	CAEBREN_28865	G0NQD5	G0MIN3	Uncharacterized protein.	Uncharacterized protein.	0.935
CAEBREN_12938	Cbn-ifta-1	G0NQD5	G0M8R5	Uncharacterized protein.	CBN-IFTA-1 protein.	0.940
CAEBREN_14741	CAEBREN_12938	G0N4X9	G0NQD5	Uncharacterized protein.	Uncharacterized protein.	0.933
CAEBREN_14741	CAEBREN_28014	G0N4X9	G0NQD6	Uncharacterized protein.	Uncharacterized protein.	0.932
CAEBREN_14741	Cbn-daf-10	G0N4X9	G0NQD4	Uncharacterized protein.	CBN-DAF-10 protein.	0.930
CAEBREN_15336	CAEBREN_12938	G0NSP0	G0NQD5	ANAPC4_WD40 domain-containing protein.	Uncharacterized protein.	0.945
CAEBREN_15336	CAEBREN_28014	G0NSP0	G0NQD6	ANAPC4_WD40 domain-containing protein.	Uncharacterized protein.	0.945
CAEBREN_15336	Cbn-daf-10	G0NSP0	G0NQD4	ANAPC4_WD40 domain-containing protein.	CBN-DAF-10 protein.	0.942
CAEBREN_28014	CAEBREN_07258	G0NQD6	G0P892	Uncharacterized protein.	Uncharacterized protein.	0.939
CAEBREN_28014	CAEBREN_08468	G0NQD6	G0NPA7	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.944

page 1 of 2

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About