(31 nodes) Two-component system network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbn-glt-1	Amino acid transporter. (492 aa)
	CAEBREN_22038	Uncharacterized protein. (943 aa)
	CAEBREN_30572	Uncharacterized protein. (579 aa)
	Cbn-nac-1	CBN-NAC-1 protein. (579 aa)
	CAEBREN_05131	Uncharacterized protein. (568 aa)
	CAEBREN_17429	Suppressor of Ty 6 homolog; May regulate transcriptional elongation by RNA polymerase II. (1521 aa)
	CAEBREN_23110	Protein-serine/threonine kinase. (401 aa)
	Cbn-nac-3	CBN-NAC-3 protein. (566 aa)
	Cbn-glt-4	Amino acid transporter. (478 aa)
	CAEBREN_20292	YrdC-like domain-containing protein. (219 aa)
	CAEBREN_06828	YrdC-like domain-containing protein. (215 aa)
	Cbn-hhat-1	CBN-HHAT-1 protein; Belongs to the membrane-bound acyltransferase family. (513 aa)
	CAEBREN_25505	Amino acid transporter. (490 aa)
	CAEBREN_10999	Amino acid transporter. (431 aa)
	CAEBREN_31917	Uncharacterized protein. (70 aa)
	CAEBREN_29340	Uncharacterized protein. (413 aa)
	CAEBREN_22777	Uncharacterized protein. (165 aa)
	CAEBREN_28293	Uncharacterized protein. (265 aa)
	CAEBREN_24029	Uncharacterized protein. (245 aa)
	CAEBREN_15690	TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (439 aa)
	CAEBREN_16448	S1 motif domain-containing protein. (769 aa)
	Cbn-glt-6	CBN-GLT-6 protein. (542 aa)
	CAEBREN_01693	Amino acid transporter. (426 aa)
	Cbn-glt-3	CBN-GLT-3 protein. (532 aa)
	CAEBREN_16402	S1 motif domain-containing protein. (645 aa)
	CAEBREN_08630	Amino acid transporter. (490 aa)
	CAEBREN_29010	Amino acid transporter. (464 aa)
	CAEBREN_05197	S1 motif domain-containing protein. (627 aa)
	CAEBREN_28493	S1 motif domain-containing protein. (748 aa)
	CAEBREN_13193	Amino acid transporter. (527 aa)
	CAEBREN_02411	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (453 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_01693	CAEBREN_05131	G0NRV6	G0ME34	Amino acid transporter.	Uncharacterized protein.	0.538
CAEBREN_01693	CAEBREN_13193	G0NRV6	G0PD18	Amino acid transporter.	Amino acid transporter.	0.427
CAEBREN_01693	CAEBREN_29340	G0NRV6	G0NB15	Amino acid transporter.	Uncharacterized protein.	0.538
CAEBREN_01693	CAEBREN_30572	G0NRV6	G0M8X9	Amino acid transporter.	Uncharacterized protein.	0.538
CAEBREN_01693	CAEBREN_31917	G0NRV6	G0NB14	Amino acid transporter.	Uncharacterized protein.	0.538
CAEBREN_01693	Cbn-glt-1	G0NRV6	G0M7N6	Amino acid transporter.	Amino acid transporter.	0.426
CAEBREN_01693	Cbn-glt-3	G0NRV6	G0NUP9	Amino acid transporter.	CBN-GLT-3 protein.	0.426
CAEBREN_01693	Cbn-glt-4	G0NRV6	G0MSR8	Amino acid transporter.	Amino acid transporter.	0.447
CAEBREN_01693	Cbn-nac-1	G0NRV6	G0MB45	Amino acid transporter.	CBN-NAC-1 protein.	0.538
CAEBREN_01693	Cbn-nac-3	G0NRV6	G0MKJ5	Amino acid transporter.	CBN-NAC-3 protein.	0.538
CAEBREN_02411	CAEBREN_23110	G0PFL7	G0MGH1	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Protein-serine/threonine kinase.	0.485
CAEBREN_05131	CAEBREN_01693	G0ME34	G0NRV6	Uncharacterized protein.	Amino acid transporter.	0.538
CAEBREN_05131	CAEBREN_08630	G0ME34	G0P7L3	Uncharacterized protein.	Amino acid transporter.	0.538
CAEBREN_05131	CAEBREN_10999	G0ME34	G0N7C5	Uncharacterized protein.	Amino acid transporter.	0.538
CAEBREN_05131	CAEBREN_13193	G0ME34	G0PD18	Uncharacterized protein.	Amino acid transporter.	0.538
CAEBREN_05131	CAEBREN_25505	G0ME34	G0N7C4	Uncharacterized protein.	Amino acid transporter.	0.538
CAEBREN_05131	CAEBREN_29010	G0ME34	G0P7L4	Uncharacterized protein.	Amino acid transporter.	0.538
CAEBREN_05131	Cbn-glt-1	G0ME34	G0M7N6	Uncharacterized protein.	Amino acid transporter.	0.538
CAEBREN_05131	Cbn-glt-3	G0ME34	G0NUP9	Uncharacterized protein.	CBN-GLT-3 protein.	0.538
CAEBREN_05131	Cbn-glt-4	G0ME34	G0MSR8	Uncharacterized protein.	Amino acid transporter.	0.538

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