(62 nodes) SNARE interactions in vesicular transport network (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAEBREN_11096	V-SNARE coiled-coil homology domain-containing protein. (108 aa)
	Cbn-tag-81	CBN-TAG-81 protein. (234 aa)
	Cbn-syx-3	CBN-SYX-3 protein; Belongs to the syntaxin family. (306 aa)
	CAEBREN_15398	Uncharacterized protein. (412 aa)
	Cbn-syx-2	CBN-SYX-2 protein. (299 aa)
	Cbn-unc-64	CBN-UNC-64 protein; Belongs to the syntaxin family. (293 aa)
	CAEBREN_29116	CYTOSOL_AP domain-containing protein. (437 aa)
	Cbn-use-1	CBN-USE-1 protein. (251 aa)
	Cbn-lpd-7	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (531 aa)
	CAEBREN_12047	Uncharacterized protein. (283 aa)
	Cbn-memb-1	CBN-MEMB-1 protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (213 aa)
	CAEBREN_04398	Uncharacterized protein. (922 aa)
	CAEBREN_15582	Uncharacterized protein. (252 aa)
	CAEBREN_05098	V-SNARE coiled-coil homology domain-containing protein. (115 aa)
	CAEBREN_13886	Uncharacterized protein. (368 aa)
	Cbn-memb-2	CBN-MEMB-2 protein. (146 aa)
	CAEBREN_01527	ANK_REP_REGION domain-containing protein. (242 aa)
	CAEBREN_06808	Uncharacterized protein. (234 aa)
	CAEBREN_25270	V-SNARE coiled-coil homology domain-containing protein. (245 aa)
	CAEBREN_30867	Uncharacterized protein. (405 aa)
	Cbn-snb-7	CBN-SNB-7 protein. (101 aa)
	Cbn-mltn-9	CBN-MLTN-9 protein. (1063 aa)
	CAEBREN_15591	Uncharacterized protein. (275 aa)
	Cbn-sec-22	CBN-SEC-22 protein; Belongs to the synaptobrevin family. (213 aa)
	Cbn-ric-4	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (577 aa)
	CAEBREN_14367	Uncharacterized protein. (353 aa)
	CAEBREN_25432	Uncharacterized protein. (370 aa)
	CAEBREN_06781	Uncharacterized protein. (384 aa)
	CAEBREN_01514	Uncharacterized protein. (364 aa)
	CAEBREN_19485	Uncharacterized protein. (408 aa)
	CAEBREN_28701	Uncharacterized protein. (320 aa)
	Cbn-mltn-8	CBN-MLTN-8 protein. (756 aa)
	CAEBREN_31864	Uncharacterized protein. (507 aa)
	CAEBREN_17793	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (291 aa)
	CAEBREN_17612	Uncharacterized protein; Belongs to the synaptobrevin family. (201 aa)
	CAEBREN_21796	Uncharacterized protein. (118 aa)
	CAEBREN_19477	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (413 aa)
	Cbn-syx-17	CBN-SYX-17 protein. (250 aa)
	Cbn-syn-4	CBN-SYN-4 protein; Belongs to the syntaxin family. (255 aa)
	CAEBREN_12999	Uncharacterized protein. (402 aa)
	CAEBREN_21045	Uncharacterized protein. (1287 aa)
	CAEBREN_13308	t-SNARE coiled-coil homology domain-containing protein. (99 aa)
	Cbn-gos-28	CBN-GOS-28 protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (233 aa)
	Cbn-mdt-6	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (245 aa)
	CAEBREN_24691	Uncharacterized protein. (136 aa)
	CAEBREN_16586	CNH domain-containing protein. (248 aa)
	Cbn-vti-1	CBN-VTI-1 protein. (221 aa)
	CAEBREN_31215	t-SNARE coiled-coil homology domain-containing protein. (329 aa)
	CAEBREN_13043	Uncharacterized protein. (1287 aa)
	CAEBREN_05678	Uncharacterized protein. (275 aa)
	CAEBREN_32270	Uncharacterized protein. (251 aa)
	CAEBREN_22666	t-SNARE coiled-coil homology domain-containing protein. (99 aa)
	CAEBREN_21295	PHD-type domain-containing protein. (227 aa)
	CAEBREN_30315	Rubredoxin_C domain-containing protein. (70 aa)
	CAEBREN_14652	Uncharacterized protein. (387 aa)
	CAEBREN_31899	Uncharacterized protein. (258 aa)
	CAEBREN_28858	Uncharacterized protein. (668 aa)
	CAEBREN_28099	Uncharacterized protein. (435 aa)
	CAEBREN_07513	Uncharacterized protein. (412 aa)
	CAEBREN_31045	Uncharacterized protein. (402 aa)
	CAEBREN_02310	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (413 aa)
	CAEBREN_32424	Uncharacterized protein. (689 aa)

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_01514	CAEBREN_02310	G0NE81	G0PM09	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.881
CAEBREN_01514	CAEBREN_05098	G0NE81	G0MP40	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.638
CAEBREN_01514	CAEBREN_11096	G0NE81	B6VBI7	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.638
CAEBREN_01514	CAEBREN_13308	G0NE81	G0NRF7	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.881
CAEBREN_01514	CAEBREN_17612	G0NE81	G0NGS4	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.881
CAEBREN_01514	CAEBREN_19477	G0NE81	G0NH12	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.881
CAEBREN_01514	CAEBREN_21796	G0NE81	G0NGS5	Uncharacterized protein.	Uncharacterized protein.	0.881
CAEBREN_01514	CAEBREN_22666	G0NE81	G0PD05	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.881
CAEBREN_01514	CAEBREN_31215	G0NE81	G0P5E7	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.401
CAEBREN_01514	CAEBREN_32270	G0NE81	G0P8J9	Uncharacterized protein.	Uncharacterized protein.	0.550
CAEBREN_01514	Cbn-memb-1	G0NE81	G0MGW7	Uncharacterized protein.	CBN-MEMB-1 protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.899
CAEBREN_01514	Cbn-memb-2	G0NE81	G0MXG1	Uncharacterized protein.	CBN-MEMB-2 protein.	0.899
CAEBREN_01514	Cbn-sec-22	G0NE81	G0N7P2	Uncharacterized protein.	CBN-SEC-22 protein; Belongs to the synaptobrevin family.	0.785
CAEBREN_01514	Cbn-snb-7	G0NE81	G0N5F7	Uncharacterized protein.	CBN-SNB-7 protein.	0.638
CAEBREN_01514	Cbn-syx-17	G0NE81	G0NK86	Uncharacterized protein.	CBN-SYX-17 protein.	0.702
CAEBREN_01514	Cbn-use-1	G0NE81	G0MF50	Uncharacterized protein.	CBN-USE-1 protein.	0.550
CAEBREN_01514	Cbn-vti-1	G0NE81	G0P4V7	Uncharacterized protein.	CBN-VTI-1 protein.	0.470
CAEBREN_01527	CAEBREN_05098	G0MYP7	G0MP40	ANK_REP_REGION domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.507
CAEBREN_01527	CAEBREN_11096	G0MYP7	B6VBI7	ANK_REP_REGION domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.507
CAEBREN_01527	CAEBREN_17612	G0MYP7	G0NGS4	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.437

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