(49 nodes) Mixed, incl. HlyD family secretion protein, and Outer membrane efflux protein network (Hymenobacter sp. APR13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AII50432.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (699 aa)
	AII50433.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (473 aa)
	AII50434.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (228 aa)
	AII50435.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (45 aa)
	AII50436.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (475 aa)
	AII50437.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (466 aa)
	AII50438.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (576 aa)
	AII50527.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (214 aa)
	lolD	ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (220 aa)
	AII51030.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (378 aa)
	AII51031.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1011 aa)
	AII51032.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (475 aa)
	AII51252.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (452 aa)
	AII51253.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (377 aa)
	AII51254.1	Transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1075 aa)
	AII51623.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1157 aa)
	AII51624.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (379 aa)
	AII51625.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (563 aa)
	AII51677.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (802 aa)
	AII51678.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (189 aa)
	AII51733.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the major facilitator superfamily. (523 aa)
	AII51734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (346 aa)
	AII51735.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (143 aa)
	AII51736.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (434 aa)
	AII51778.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (420 aa)
	AII51997.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (409 aa)
	AII50355.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	AII53335.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (372 aa)
	AII53494.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (486 aa)
	AII53496.1	Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1057 aa)
	AII53497.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (353 aa)
	AII53635.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (412 aa)
	AII53737.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (401 aa)
	AII53787.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (80 aa)
	AII53788.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (445 aa)
	AII53789.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (475 aa)
	AII54225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (399 aa)
	AII54226.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (426 aa)
	AII54227.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (246 aa)
	AII54228.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (469 aa)
	AII54229.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (402 aa)
	AII54306.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1067 aa)
	AII54307.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (381 aa)
	AII54308.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (193 aa)
	AII54309.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (413 aa)
	AII54381.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (381 aa)
	AII54382.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1049 aa)
	AII54383.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (461 aa)
	AII54399.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (223 aa)

Your Current Organism:

Hymenobacter sp. APR13

NCBI taxonomy Id: 1356852
Other names: H. sp. APR13

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AII50355.1	AII50527.1	N008_13195	N008_00825	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.672
AII50355.1	AII51030.1	N008_13195	N008_03405	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.459
AII50355.1	AII51624.1	N008_13195	N008_06460	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.470
AII50355.1	AII51778.1	N008_13195	N008_07250	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.987
AII50355.1	AII51997.1	N008_13195	N008_08400	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.789
AII50355.1	AII53335.1	N008_13195	N008_15275	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.789
AII50355.1	AII53635.1	N008_13195	N008_16845	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
AII50355.1	AII53788.1	N008_13195	N008_17625	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.400
AII50355.1	AII53789.1	N008_13195	N008_17630	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.811
AII50355.1	AII54225.1	N008_13195	N008_19845	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.862
AII50355.1	AII54226.1	N008_13195	N008_19850	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.890
AII50432.1	AII50433.1	N008_00350	N008_00355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.499
AII50433.1	AII50432.1	N008_00355	N008_00350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.499
AII50433.1	AII50434.1	N008_00355	N008_00360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.505
AII50434.1	AII50433.1	N008_00360	N008_00355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.505
AII50434.1	AII50435.1	N008_00360	N008_00365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.581
AII50435.1	AII50434.1	N008_00365	N008_00360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.581
AII50435.1	AII50436.1	N008_00365	N008_00370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.430
AII50436.1	AII50435.1	N008_00370	N008_00365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.430
AII50436.1	AII50437.1	N008_00370	N008_00375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.941