(29 nodes) Signal transduction histidine kinase, dimerisation/phosphoacceptor domain, and PAS fold-3 network (Hymenobacter sp. APR13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AII50717.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (942 aa)
	AII51234.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (510 aa)
	AII51235.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (136 aa)
	AII51477.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1159 aa)
	AII51508.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (303 aa)
	AII51584.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (608 aa)
	AII51610.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (919 aa)
	AII51616.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1019 aa)
	AII52168.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (664 aa)
	AII52353.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1189 aa)
	AII52399.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (238 aa)
	AII52520.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1242 aa)
	AII52521.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (136 aa)
	AII52663.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (367 aa)
	AII52664.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (233 aa)
	AII52735.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1193 aa)
	AII52934.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (130 aa)
	AII52935.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (513 aa)
	AII53169.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (116 aa)
	AII53170.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (434 aa)
	AII53225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (163 aa)
	AII53422.1	Hisitidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (125 aa)
	AII53423.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1362 aa)
	AII53604.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (414 aa)
	AII53605.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (146 aa)
	AII53922.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (538 aa)
	AII53923.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (351 aa)
	AII54340.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (539 aa)
	AII54341.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (354 aa)

Your Current Organism:

Hymenobacter sp. APR13

NCBI taxonomy Id: 1356852
Other names: H. sp. APR13

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AII50717.1	AII51234.1	N008_01805	N008_04465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.837
AII50717.1	AII51235.1	N008_01805	N008_04470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.974
AII50717.1	AII51477.1	N008_01805	N008_05705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.988
AII50717.1	AII51508.1	N008_01805	N008_05865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.988
AII50717.1	AII51584.1	N008_01805	N008_06255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.835
AII50717.1	AII51610.1	N008_01805	N008_06390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.988
AII50717.1	AII51616.1	N008_01805	N008_06420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.981
AII50717.1	AII52168.1	N008_01805	N008_09290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.987
AII50717.1	AII52353.1	N008_01805	N008_10235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.988
AII50717.1	AII52399.1	N008_01805	N008_10475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.985
AII50717.1	AII52520.1	N008_01805	N008_11100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.981
AII50717.1	AII52521.1	N008_01805	N008_11105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.970
AII50717.1	AII52663.1	N008_01805	N008_11845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.828
AII50717.1	AII52664.1	N008_01805	N008_11850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.489
AII50717.1	AII52735.1	N008_01805	N008_12210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.987
AII50717.1	AII52934.1	N008_01805	N008_13230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.972
AII50717.1	AII52935.1	N008_01805	N008_13235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.832
AII50717.1	AII53169.1	N008_01805	N008_14445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.851
AII50717.1	AII53170.1	N008_01805	N008_14450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.983
AII50717.1	AII53225.1	N008_01805	N008_14725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.941