(64 nodes) Peptidyl-histidine phosphorylation network (Hymenobacter sp. APR13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AII51408.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (320 aa)
	AII51477.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1159 aa)
	AII51508.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (303 aa)
	AII51584.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (608 aa)
	AII51610.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (919 aa)
	AII51616.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1019 aa)
	AII51856.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (393 aa)
	AII50432.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (699 aa)
	AII50653.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (466 aa)
	AII50717.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (942 aa)
	AII50742.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (365 aa)
	AII50883.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (608 aa)
	AII51024.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (271 aa)
	AII51234.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (510 aa)
	AII51287.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (96 aa)
	AII51366.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (367 aa)
	AII51405.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1018 aa)
	AII52520.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1242 aa)
	AII52560.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (114 aa)
	AII52594.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (341 aa)
	AII52663.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (367 aa)
	AII52735.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1193 aa)
	AII52840.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (536 aa)
	AII52935.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (513 aa)
	AII52981.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1249 aa)
	AII53170.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (434 aa)
	AII53180.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (371 aa)
	AII53183.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (348 aa)
	AII53259.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (739 aa)
	AII53291.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (682 aa)
	AII53423.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1362 aa)
	AII53481.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (971 aa)
	AII53482.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (659 aa)
	AII53492.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (465 aa)
	AII53604.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (414 aa)
	AII53606.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (773 aa)
	AII53679.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (385 aa)
	AII53740.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (460 aa)
	AII53758.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1024 aa)
	AII53852.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (190 aa)
	AII53922.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (538 aa)
	AII54054.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (454 aa)
	AII54074.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (369 aa)
	AII54075.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (390 aa)
	AII54086.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (916 aa)
	AII54094.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (679 aa)
	AII54202.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (543 aa)
	AII54206.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1473 aa)
	AII54324.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (494 aa)
	AII54340.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (539 aa)
	AII54358.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (392 aa)
	AII54369.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (408 aa)
	AII54379.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (458 aa)
	AII54413.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (371 aa)
	AII51907.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (393 aa)
	AII51908.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (588 aa)
	AII51995.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (332 aa)
	AII52015.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (461 aa)
	AII52127.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (716 aa)
	AII52169.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (468 aa)
	AII52188.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (338 aa)
	AII52330.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (351 aa)
	AII52353.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1189 aa)
	AII52399.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (238 aa)

Your Current Organism:

Hymenobacter sp. APR13

NCBI taxonomy Id: 1356852
Other names: H. sp. APR13

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AII50432.1	AII50717.1	N008_00350	N008_01805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.410
AII50432.1	AII51477.1	N008_00350	N008_05705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.636
AII50432.1	AII51508.1	N008_00350	N008_05865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.635
AII50432.1	AII51610.1	N008_00350	N008_06390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.408
AII50432.1	AII52353.1	N008_00350	N008_10235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.592
AII50432.1	AII52399.1	N008_00350	N008_10475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.458
AII50432.1	AII52735.1	N008_00350	N008_12210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.687
AII50432.1	AII53423.1	N008_00350	N008_15740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.684
AII50432.1	AII53481.1	N008_00350	N008_16040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.472
AII50432.1	AII53604.1	N008_00350	N008_16690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.534
AII50432.1	AII54206.1	N008_00350	N008_19735	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.717
AII50432.1	AII54340.1	N008_00350	N008_20425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.408
AII50653.1	AII50717.1	N008_01470	N008_01805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.609
AII50653.1	AII51477.1	N008_01470	N008_05705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.599
AII50653.1	AII51508.1	N008_01470	N008_05865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.583
AII50653.1	AII51610.1	N008_01470	N008_06390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.607
AII50653.1	AII52015.1	N008_01470	N008_08495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.400
AII50653.1	AII52353.1	N008_01470	N008_10235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.606
AII50653.1	AII52399.1	N008_01470	N008_10475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.691
AII50653.1	AII52735.1	N008_01470	N008_12210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.571