(15 nodes) PAS domain network (Hymenobacter sp. APR13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AII51477.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1159 aa)
	AII51616.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1019 aa)
	AII51908.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (588 aa)
	AII52353.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1189 aa)
	AII52399.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (238 aa)
	AII52520.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1242 aa)
	AII53170.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (434 aa)
	AII53225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (163 aa)
	AII53423.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1362 aa)
	AII53481.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (971 aa)
	AII53482.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (659 aa)
	AII53679.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (385 aa)
	AII53922.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (538 aa)
	AII54222.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (432 aa)
	AII54340.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (539 aa)

Your Current Organism:

Hymenobacter sp. APR13

NCBI taxonomy Id: 1356852
Other names: H. sp. APR13

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AII51477.1	AII51616.1	N008_05705	N008_06420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.976
AII51477.1	AII51908.1	N008_05705	N008_07945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.623
AII51477.1	AII52353.1	N008_05705	N008_10235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.989
AII51477.1	AII52399.1	N008_05705	N008_10475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
AII51477.1	AII52520.1	N008_05705	N008_11100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.981
AII51477.1	AII53170.1	N008_05705	N008_14450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.986
AII51477.1	AII53225.1	N008_05705	N008_14725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.998
AII51477.1	AII53423.1	N008_05705	N008_15740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.989
AII51477.1	AII53481.1	N008_05705	N008_16040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.975
AII51477.1	AII53482.1	N008_05705	N008_16045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.888
AII51477.1	AII53679.1	N008_05705	N008_17070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.644
AII51477.1	AII53922.1	N008_05705	N008_18300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.899
AII51477.1	AII54222.1	N008_05705	N008_19830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.495
AII51477.1	AII54340.1	N008_05705	N008_20425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.900
AII51616.1	AII51477.1	N008_06420	N008_05705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.976
AII51616.1	AII52353.1	N008_06420	N008_10235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.979
AII51616.1	AII52399.1	N008_06420	N008_10475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.925
AII51616.1	AII52520.1	N008_06420	N008_11100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.403
AII51616.1	AII53170.1	N008_06420	N008_14450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.649
AII51616.1	AII53225.1	N008_06420	N008_14725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.870