(10 nodes) RND efflux pump, membrane fusion protein, barrel-sandwich domain network (Hymenobacter sp. APR13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AII54307.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (381 aa)
	AII54381.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (381 aa)
	AII51253.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (377 aa)
	AII51624.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (379 aa)
	AII51734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (346 aa)
	AII52094.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (189 aa)
	AII53497.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (353 aa)
	AII53737.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (401 aa)
	AII53789.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (475 aa)
	AII51030.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (378 aa)

Your Current Organism:

Hymenobacter sp. APR13

NCBI taxonomy Id: 1356852
Other names: H. sp. APR13

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AII51030.1	AII52094.1	N008_03405	N008_08895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.452
AII51253.1	AII51734.1	N008_04560	N008_07030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.648
AII51734.1	AII51253.1	N008_07030	N008_04560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.648
AII52094.1	AII51030.1	N008_08895	N008_03405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.452