(8 nodes) Amidohydrolase family network (Hymenobacter sp. APR13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AII50551.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (552 aa)
	pyrC	Hypothetical protein; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. (432 aa)
	ade	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family. (555 aa)
	AII52030.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (412 aa)
	AII52031.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1017 aa)
	AII53048.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (521 aa)
	AII53865.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (464 aa)
	AII54295.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (377 aa)

Your Current Organism:

Hymenobacter sp. APR13

NCBI taxonomy Id: 1356852
Other names: H. sp. APR13

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AII50551.1	AII52031.1	N008_00945	N008_08575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.421
AII50551.1	AII53048.1	N008_00945	N008_13820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.729
AII52030.1	AII52031.1	N008_08570	N008_08575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.959
AII52031.1	AII50551.1	N008_08575	N008_00945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.421
AII52031.1	AII52030.1	N008_08575	N008_08570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.959
AII53048.1	AII50551.1	N008_13820	N008_00945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.729