STRINGSTRING
AII53681.1 AII53681.1 AII53697.1 AII53697.1 AII53971.1 AII53971.1 AII54050.1 AII54050.1 AII54060.1 AII54060.1 AII54103.1 AII54103.1 AII54223.1 AII54223.1 AII53261.1 AII53261.1 AII50426.1 AII50426.1 AII50438.1 AII50438.1 AII50450.1 AII50450.1 AII50455.1 AII50455.1 AII50506.1 AII50506.1 AII50538.1 AII50538.1 lolD lolD AII50903.1 AII50903.1 AII50981.1 AII50981.1 AII51045.1 AII51045.1 AII51077.1 AII51077.1 AII51112.1 AII51112.1 AII51175.1 AII51175.1 atpD atpD AII51243.1 AII51243.1 dnaX dnaX clpB clpB AII51409.1 AII51409.1 AII51737.1 AII51737.1 AII51740.1 AII51740.1 AII51772.1 AII51772.1 AII51775.1 AII51775.1 AII51873.1 AII51873.1 AII51878.1 AII51878.1 AII51900.1 AII51900.1 AII51933.1 AII51933.1 recF recF AII51958.1 AII51958.1 radA radA AII52354.1 AII52354.1 AII52470.1 AII52470.1 AII52465.1 AII52465.1 AII52443.1 AII52443.1 AII54438.1 AII54438.1 AII54227.1 AII54227.1 recA recA AII52671.1 AII52671.1 ruvB ruvB ftsH ftsH rho rho AII52878.1 AII52878.1 dnaA dnaA lon lon hslU hslU AII50355.1 AII50355.1 AII52988.1 AII52988.1 AII53109.1 AII53109.1 AII53234.1 AII53234.1 AII53299.1 AII53299.1 AII53349.1 AII53349.1 AII53397.1 AII53397.1 AII53475.1 AII53475.1 AII53621.1 AII53621.1 AII53680.1 AII53680.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AII53681.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (275 aa)
AII53697.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (671 aa)
AII53971.1ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (540 aa)
AII54050.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
AII54060.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (297 aa)
AII54103.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (236 aa)
AII54223.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (459 aa)
AII53261.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (474 aa)
AII50426.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (237 aa)
AII50438.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (576 aa)
AII50450.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (302 aa)
AII50455.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (269 aa)
AII50506.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (211 aa)
AII50538.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (385 aa)
lolDABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (220 aa)
AII50903.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (443 aa)
AII50981.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (603 aa)
AII51045.1ATP-dependent Clp protease ClpC; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ClpA/ClpB family. (873 aa)
AII51077.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (603 aa)
AII51112.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (313 aa)
AII51175.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (633 aa)
atpDF0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (501 aa)
AII51243.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the AAA ATPase family. (458 aa)
dnaXHypothetical protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (427 aa)
clpBMolecular chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (872 aa)
AII51409.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (300 aa)
AII51737.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (704 aa)
AII51740.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (436 aa)
AII51772.1Heme ABC transporter ATP-binding protein; ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (555 aa)
AII51775.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (221 aa)
AII51873.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (595 aa)
AII51878.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (592 aa)
AII51900.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (450 aa)
AII51933.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (243 aa)
recFHypothetical protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (374 aa)
AII51958.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily. (677 aa)
radAHypothetical protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (460 aa)
AII52354.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (454 aa)
AII52470.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (613 aa)
AII52465.1Magnesium chelatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (512 aa)
AII52443.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily. (322 aa)
AII54438.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (644 aa)
AII54227.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (246 aa)
recARecombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (382 aa)
AII52671.1ATPase AAA; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (323 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (349 aa)
ftsHHypothetical protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (706 aa)
rhoHypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (748 aa)
AII52878.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (325 aa)
dnaAHypothetical protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (469 aa)
lonLon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (819 aa)
hslUATP-dependent protease; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (469 aa)
AII50355.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
AII52988.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (355 aa)
AII53109.1ATPase AAA; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (389 aa)
AII53234.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (636 aa)
AII53299.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (639 aa)
AII53349.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (244 aa)
AII53397.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1667 aa)
AII53475.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (596 aa)
AII53621.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (457 aa)
AII53680.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (452 aa)
Your Current Organism:
Hymenobacter sp. APR13
NCBI taxonomy Id: 1356852
Other names: H. sp. APR13
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