(72 nodes) Mostly uncharacterized, incl. Bacterial extracellular solute-binding proteins, family 3, and Extracellular region network (Pseudomonas syringae CC1557)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AHG38897.1	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa)
	AHG38900.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AHG38916.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	AHG38926.1	Penicillin amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (795 aa)
	AHG39215.1	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (640 aa)
	AHG39216.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)
	AHG39217.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (82 aa)
	AHG39218.1	Repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AHG39219.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	AHG39220.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	AHG39221.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
	AHG39222.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
	AHG39223.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (62 aa)
	AHG39224.1	Tail sheath protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
	AHG39225.1	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
	AHG39226.1	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)
	AHG39227.1	Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)
	AHG39228.1	2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	AHG39229.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	AHG39230.1	Phage assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	AHG39231.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	AHG39232.1	Baseplate J protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	AHG39233.1	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	AHG39234.1	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	AHG39235.1	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	AHG39236.1	Tail fiber assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	AHG39238.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
	AHG39598.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AHG39739.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	AHG39886.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1634 aa)
	AHG39914.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AHG39915.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	AHG40193.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AHG40194.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AHG40196.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	AHG40264.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	AHG40294.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	AHG40506.1	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1637 aa)
	AHG43538.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (168 aa)
	AHG43539.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (803 aa)
	AHG43540.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1106 aa)
	AHG40507.1	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1581 aa)
	AHG40538.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
	AHG40620.1	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	AHG40621.1	TonB-denpendent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (703 aa)
	AHG40751.1	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AHG40875.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	AHG41367.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	AHG41374.1	Helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)
	AHG41542.1	Tyrosyl-trna synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	AHG41840.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AHG41860.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	AHG42064.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	AHG42208.1	Chromosome segregation ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	AHG42209.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AHG42229.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AHG42247.1	preQ0 transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	AHG42623.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	AHG42641.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
	AHG42642.1	Chromosome partitioning protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	AHG42643.1	Chromosome segregation ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (939 aa)
	AHG42816.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	AHG42830.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	AHG42989.1	HDOD domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
	AHG43037.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AHG43232.1	Hisitidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	AHG43294.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	AHG43295.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa)
	AHG43446.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (65 aa)
	AHG43447.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	AHG43448.1	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methyltransferase superfamily. (314 aa)
	AHG43449.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)

Your Current Organism:

Pseudomonas syringae CC1557

NCBI taxonomy Id: 1357279
Other names: P. syringae CC1557

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHG38897.1	AHG38900.1	N018_00995	N018_01010	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AHG38897.1	AHG39215.1	N018_00995	N018_02695	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AHG38897.1	AHG39739.1	N018_00995	N018_05580	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
AHG38897.1	AHG39886.1	N018_00995	N018_06360	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
AHG38897.1	AHG40264.1	N018_00995	N018_08390	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
AHG38897.1	AHG40506.1	N018_00995	N018_09700	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AHG38897.1	AHG40620.1	N018_00995	N018_10330	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
AHG38897.1	AHG41374.1	N018_00995	N018_14720	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AHG38897.1	AHG41840.1	N018_00995	N018_17155	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
AHG38897.1	AHG42229.1	N018_00995	N018_19220	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AHG38897.1	AHG42641.1	N018_00995	N018_21390	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
AHG38897.1	AHG42642.1	N018_00995	N018_21395	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
AHG38897.1	AHG42643.1	N018_00995	N018_21400	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome segregation ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AHG38897.1	AHG42816.1	N018_00995	N018_22395	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
AHG38897.1	AHG42830.1	N018_00995	N018_22470	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AHG38897.1	AHG42989.1	N018_00995	N018_23290	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HDOD domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AHG38900.1	AHG38897.1	N018_01010	N018_00995	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AHG38900.1	AHG41840.1	N018_01010	N018_17155	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AHG38900.1	AHG42229.1	N018_01010	N018_19220	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AHG38900.1	AHG43037.1	N018_01010	N018_23530	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541