(29 nodes) Bacterial chemotaxis network (Pseudomonas syringae CC1557)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AHG40201.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AHG40202.1	Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AHG40255.1	Chemotaxis protein CheY; Chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	AHG40256.1	Protein phosphatase; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). (261 aa)
	AHG40257.1	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (751 aa)
	cheB	Chemotaxis protein CheY; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (389 aa)
	AHG40262.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AHG40263.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	AHG40285.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
	AHG40606.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)
	AHG40607.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	AHG41080.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	AHG43633.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (738 aa)
	AHG41304.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
	AHG41438.1	Chemotaxis protein CheB; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	AHG41439.1	Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AHG41722.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AHG42370.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	AHG42603.1	Chemotaxis protein CheC; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AHG42625.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	AHG42709.1	Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	AHG42710.1	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	AHG42712.1	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (700 aa)
	AHG42713.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
	AHG42714.1	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	AHG42715.1	SAM-dependent methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (269 aa)
	cheD	Chemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. (177 aa)
	cheB-3	Chemotaxis protein CheY; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (358 aa)
	AHG43060.1	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1987 aa)

Your Current Organism:

Pseudomonas syringae CC1557

NCBI taxonomy Id: 1357279
Other names: P. syringae CC1557

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHG40201.1	AHG40202.1	N018_08055	N018_08060	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.881
AHG40201.1	AHG40255.1	N018_08055	N018_08345	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AHG40201.1	AHG40256.1	N018_08055	N018_08350	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein phosphatase; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).	0.945
AHG40201.1	AHG40257.1	N018_08055	N018_08355	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AHG40201.1	AHG40262.1	N018_08055	N018_08380	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
AHG40201.1	AHG40263.1	N018_08055	N018_08385	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
AHG40201.1	AHG40285.1	N018_08055	N018_08495	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AHG40201.1	AHG40606.1	N018_08055	N018_10255	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AHG40201.1	AHG40607.1	N018_08055	N018_10260	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AHG40201.1	AHG41080.1	N018_08055	N018_13000	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AHG40201.1	AHG41304.1	N018_08055	N018_14330	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AHG40201.1	AHG41438.1	N018_08055	N018_15055	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669
AHG40201.1	AHG41439.1	N018_08055	N018_15060	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AHG40201.1	AHG41722.1	N018_08055	N018_16545	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AHG40201.1	AHG42370.1	N018_08055	N018_19955	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AHG40201.1	AHG42603.1	N018_08055	N018_21200	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AHG40201.1	AHG42625.1	N018_08055	N018_21310	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
AHG40201.1	AHG42709.1	N018_08055	N018_21770	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AHG40201.1	AHG42710.1	N018_08055	N018_21775	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AHG40201.1	AHG42712.1	N018_08055	N018_21785	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988