5 items (Arthrobacter sp. QXT31) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APX00831.1	CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. (276 aa)
	APX00832.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	APX00836.1	acetyl/propionyl-CoA carboxylase subuit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (754 aa)
	APX00837.1	methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
	APX00838.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)

Your Current Organism:

Arthrobacter sp. QXT31

NCBI taxonomy Id: 1357915
Other names: A. sp. QXT-31, Arthrobacter sp. QXT-31

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APX00831.1	APX00832.1	BWQ92_03005	BWQ92_03010	CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
APX00831.1	APX00836.1	BWQ92_03005	BWQ92_03030	CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	acetyl/propionyl-CoA carboxylase subuit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
APX00831.1	APX00837.1	BWQ92_03005	BWQ92_03035	CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
APX00831.1	APX00838.1	BWQ92_03005	BWQ92_03040	CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
APX00832.1	APX00831.1	BWQ92_03010	BWQ92_03005	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.983
APX00832.1	APX00836.1	BWQ92_03010	BWQ92_03030	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl/propionyl-CoA carboxylase subuit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
APX00832.1	APX00837.1	BWQ92_03010	BWQ92_03035	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
APX00832.1	APX00838.1	BWQ92_03010	BWQ92_03040	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
APX00836.1	APX00831.1	BWQ92_03030	BWQ92_03005	acetyl/propionyl-CoA carboxylase subuit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.730
APX00836.1	APX00832.1	BWQ92_03030	BWQ92_03010	acetyl/propionyl-CoA carboxylase subuit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
APX00836.1	APX00837.1	BWQ92_03030	BWQ92_03035	acetyl/propionyl-CoA carboxylase subuit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
APX00836.1	APX00838.1	BWQ92_03030	BWQ92_03040	acetyl/propionyl-CoA carboxylase subuit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
APX00837.1	APX00831.1	BWQ92_03035	BWQ92_03005	methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.787
APX00837.1	APX00832.1	BWQ92_03035	BWQ92_03010	methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
APX00837.1	APX00836.1	BWQ92_03035	BWQ92_03030	methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl/propionyl-CoA carboxylase subuit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
APX00837.1	APX00838.1	BWQ92_03035	BWQ92_03040	methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
APX00838.1	APX00831.1	BWQ92_03040	BWQ92_03005	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.608
APX00838.1	APX00832.1	BWQ92_03040	BWQ92_03010	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
APX00838.1	APX00836.1	BWQ92_03040	BWQ92_03030	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl/propionyl-CoA carboxylase subuit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
APX00838.1	APX00837.1	BWQ92_03040	BWQ92_03035	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705