(19 nodes) Mixed, incl. Autotransporter beta-domain, and Extracellular region network (Orientia chuto)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KJV57538.1	Hypothetical protein. (141 aa)
	KJV57529.1	Phage conserved hypothetical BR0599 family protein. (57 aa)
	KJV57511.1	Hypothetical protein. (158 aa)
	KJV57534.1	Hypothetical protein. (54 aa)
	KJV57514.1	Hypothetical protein. (141 aa)
	KJV57525.1	Hypothetical protein. (182 aa)
	KJV57482.1	Phage major capsid protein, HK97 family. (374 aa)
	KJV57537.1	Phage prohead protease, HK97 family. (181 aa)
	KJV57533.1	Putative RNA-binding domain protein. (93 aa)
	KJV57531.1	Hypothetical protein. (39 aa)
	KJV57261.1	Outer membrane autotransporter barrel domain protein. (387 aa)
	KJV57109.1	Autotransporter beta-domain protein. (690 aa)
	KJV57069.1	Hypothetical protein. (62 aa)
	KJV56346.1	Membrane transport family protein. (307 aa)
	KJV56201.1	Autotransporter beta-domain protein. (1404 aa)
	KJV56118.1	GTA TIM-barrel-like domain protein. (731 aa)
	KJV56122.1	Terminase-like family protein. (474 aa)
	KJV55439.1	Autotransporter beta-domain protein. (540 aa)
	KJV55382.1	Phage portal protein, HK97 family. (393 aa)

Your Current Organism:

Orientia chuto

NCBI taxonomy Id: 1359168
Other names: O. chuto str. Dubai, Orientia chuto str. Dubai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KJV55382.1	KJV56118.1	OCHUTO_0864	OCHUTO_0587	Phage portal protein, HK97 family.	GTA TIM-barrel-like domain protein.	0.898
KJV55382.1	KJV56122.1	OCHUTO_0864	OCHUTO_0609	Phage portal protein, HK97 family.	Terminase-like family protein.	0.543
KJV55382.1	KJV57482.1	OCHUTO_0864	OCHUTO_0083	Phage portal protein, HK97 family.	Phage major capsid protein, HK97 family.	0.944
KJV55382.1	KJV57511.1	OCHUTO_0864	OCHUTO_0079	Phage portal protein, HK97 family.	Hypothetical protein.	0.638
KJV55382.1	KJV57525.1	OCHUTO_0864	OCHUTO_0082	Phage portal protein, HK97 family.	Hypothetical protein.	0.847
KJV55382.1	KJV57529.1	OCHUTO_0864	OCHUTO_0078	Phage portal protein, HK97 family.	Phage conserved hypothetical BR0599 family protein.	0.537
KJV55382.1	KJV57537.1	OCHUTO_0864	OCHUTO_0084	Phage portal protein, HK97 family.	Phage prohead protease, HK97 family.	0.833
KJV55439.1	KJV56118.1	OCHUTO_0832	OCHUTO_0587	Autotransporter beta-domain protein.	GTA TIM-barrel-like domain protein.	0.661
KJV55439.1	KJV57525.1	OCHUTO_0832	OCHUTO_0082	Autotransporter beta-domain protein.	Hypothetical protein.	0.538
KJV56118.1	KJV55382.1	OCHUTO_0587	OCHUTO_0864	GTA TIM-barrel-like domain protein.	Phage portal protein, HK97 family.	0.898
KJV56118.1	KJV55439.1	OCHUTO_0587	OCHUTO_0832	GTA TIM-barrel-like domain protein.	Autotransporter beta-domain protein.	0.661
KJV56118.1	KJV56201.1	OCHUTO_0587	OCHUTO_0573	GTA TIM-barrel-like domain protein.	Autotransporter beta-domain protein.	0.661
KJV56118.1	KJV57482.1	OCHUTO_0587	OCHUTO_0083	GTA TIM-barrel-like domain protein.	Phage major capsid protein, HK97 family.	0.897
KJV56118.1	KJV57511.1	OCHUTO_0587	OCHUTO_0079	GTA TIM-barrel-like domain protein.	Hypothetical protein.	0.717
KJV56118.1	KJV57525.1	OCHUTO_0587	OCHUTO_0082	GTA TIM-barrel-like domain protein.	Hypothetical protein.	0.645
KJV56118.1	KJV57529.1	OCHUTO_0587	OCHUTO_0078	GTA TIM-barrel-like domain protein.	Phage conserved hypothetical BR0599 family protein.	0.660
KJV56118.1	KJV57537.1	OCHUTO_0587	OCHUTO_0084	GTA TIM-barrel-like domain protein.	Phage prohead protease, HK97 family.	0.793
KJV56122.1	KJV55382.1	OCHUTO_0609	OCHUTO_0864	Terminase-like family protein.	Phage portal protein, HK97 family.	0.543
KJV56122.1	KJV56346.1	OCHUTO_0609	OCHUTO_0489	Terminase-like family protein.	Membrane transport family protein.	0.530
KJV56122.1	KJV57482.1	OCHUTO_0609	OCHUTO_0083	Terminase-like family protein.	Phage major capsid protein, HK97 family.	0.498