53 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_15085	Nucleoporin seh1; Belongs to the WD repeat SEC13 family. (393 aa)
	L798_13841	Ras-related protein Rab-23. (236 aa)
	L798_09595	WD repeat-containing protein 24. (794 aa)
	L798_09626	Epsin-2. (576 aa)
	L798_09594	WD repeat-containing protein mio. (879 aa)
	L798_11414	Pleckstrin-like proteiny domain-containing family M member 3. (703 aa)
	L798_10551	Tumor protein p53-inducible nuclear protein 1. (272 aa)
	L798_12003	Ras-related protein Rab-39A. (217 aa)
	L798_01963	Uncharacterized protein. (602 aa)
	L798_00401	Autophagy protein 5; Involved in autophagic vesicle formation. (264 aa)
	L798_13295	Testis-expressed sequence 264 protein. (440 aa)
	L798_05501	Gamma-aminobutyric acid receptor-associated protein. (117 aa)
	L798_12041	Autophagy-related protein 3. (317 aa)
	L798_00034	Synaptojanin-1. (86 aa)
	L798_03744	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (834 aa)
	L798_00962	Tumor suppressor candidate 4. (414 aa)
	L798_03081	Putative inactive serine/threonine-protein kinase lvsG. (410 aa)
	L798_01793	Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family. (614 aa)
	L798_01941	Uncharacterized protein. (369 aa)
	L798_06479	Ras-related protein Rab-7a. (206 aa)
	L798_09773	Microtubule-associated proteins 1A/1B light chain 3C. (140 aa)
	L798_07293	Ras-related protein Rab-24. (200 aa)
	L798_08680	Phosphatidylinositol 3-kinase catalytic subunit type 3. (930 aa)
	L798_04344	Ras-related protein Rab-6A. (210 aa)
	L798_12407	Ras-related protein Rab-32. (636 aa)
	L798_02485	Zinc finger FYVE domain-containing protein 1. (697 aa)
	L798_12409	Ras-related protein Rab-32. (313 aa)
	L798_03760	Calcium-binding and coiled-coil domain-containing protein 2. (242 aa)
	L798_06030	Magnesium-dependent phosphatase 1. (184 aa)
	L798_01375	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family. (803 aa)
	L798_05732	Ras-related protein Rab-11A. (215 aa)
	L798_06355	Serine/threonine-protein kinase ULK3; Belongs to the protein kinase superfamily. (466 aa)
	L798_03868	Uncharacterized protein. (558 aa)
	L798_03845	Autophagy-related protein 16-1. (137 aa)
	L798_04446	Next to BRCA1 gene 1 protein. (724 aa)
	L798_09913	WD repeat domain phosphoinositide-interacting protein 2. (474 aa)
	L798_09448	Tumor suppressor candidate 4. (362 aa)
	L798_04118	Syntaxin-17. (314 aa)
	L798_06936	Guanine nucleotide-binding protein subunit beta-2-like 1. (320 aa)
	L798_07230	Proactivator polypeptide. (782 aa)
	L798_07524	Sequestosome-1. (491 aa)
	L798_01002	Synaptojanin-1. (943 aa)
	L798_06935	Guanine nucleotide-binding protein subunit beta-like protein. (317 aa)
	L798_02521	WD repeat-containing protein 81. (1458 aa)
	L798_11970	Ras-related protein Rab-18-B. (206 aa)
	L798_10679	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (820 aa)
	L798_12879	Optineurin. (704 aa)
	L798_08207	Uncharacterized protein. (1229 aa)
	L798_07166	Uncharacterized protein. (570 aa)
	L798_08026	TBC1 domain family member 14. (899 aa)
	L798_08480	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family. (220 aa)
	L798_12251	TBC1 domain family member 25. (936 aa)
	L798_14049	Peptidylprolyl isomerase. (432 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_00034	L798_09626	A0A067QP12	A0A067R050	Synaptojanin-1.	Epsin-2.	0.424
L798_00401	L798_03845	A0A067QVF6	A0A067RCJ6	Autophagy protein 5; Involved in autophagic vesicle formation.	Autophagy-related protein 16-1.	0.982
L798_00401	L798_03868	A0A067QVF6	A0A067RAQ4	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.872
L798_00401	L798_04118	A0A067QVF6	A0A067RDE9	Autophagy protein 5; Involved in autophagic vesicle formation.	Syntaxin-17.	0.686
L798_00401	L798_04446	A0A067QVF6	A0A067RCL2	Autophagy protein 5; Involved in autophagic vesicle formation.	Next to BRCA1 gene 1 protein.	0.804
L798_00401	L798_05501	A0A067QVF6	A0A067QS99	Autophagy protein 5; Involved in autophagic vesicle formation.	Gamma-aminobutyric acid receptor-associated protein.	0.920
L798_00401	L798_06355	A0A067QVF6	A0A067RA22	Autophagy protein 5; Involved in autophagic vesicle formation.	Serine/threonine-protein kinase ULK3; Belongs to the protein kinase superfamily.	0.900
L798_00401	L798_07524	A0A067QVF6	A0A067RF16	Autophagy protein 5; Involved in autophagic vesicle formation.	Sequestosome-1.	0.866
L798_00401	L798_08207	A0A067QVF6	A0A067R499	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.499
L798_00401	L798_08680	A0A067QVF6	A0A067RKC6	Autophagy protein 5; Involved in autophagic vesicle formation.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.887
L798_00401	L798_09773	A0A067QVF6	A0A067R826	Autophagy protein 5; Involved in autophagic vesicle formation.	Microtubule-associated proteins 1A/1B light chain 3C.	0.814
L798_00401	L798_09913	A0A067QVF6	A0A067RCU6	Autophagy protein 5; Involved in autophagic vesicle formation.	WD repeat domain phosphoinositide-interacting protein 2.	0.953
L798_00401	L798_10679	A0A067QVF6	A0A067R6I8	Autophagy protein 5; Involved in autophagic vesicle formation.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.714
L798_00401	L798_12041	A0A067QVF6	A0A067QRY9	Autophagy protein 5; Involved in autophagic vesicle formation.	Autophagy-related protein 3.	0.998
L798_00962	L798_01963	A0A067QLB4	A0A067QVK6	Tumor suppressor candidate 4.	Uncharacterized protein.	0.995
L798_00962	L798_09448	A0A067QLB4	A0A067R7Y0	Tumor suppressor candidate 4.	Tumor suppressor candidate 4.	0.901
L798_00962	L798_09594	A0A067QLB4	A0A067R031	Tumor suppressor candidate 4.	WD repeat-containing protein mio.	0.975
L798_00962	L798_09595	A0A067QLB4	A0A067R0D1	Tumor suppressor candidate 4.	WD repeat-containing protein 24.	0.978
L798_00962	L798_15085	A0A067QLB4	A0A067R0L8	Tumor suppressor candidate 4.	Nucleoporin seh1; Belongs to the WD repeat SEC13 family.	0.974
L798_01002	L798_09626	A0A067RG31	A0A067R050	Synaptojanin-1.	Epsin-2.	0.424