49 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_15672	Protein bicaudal D. (788 aa)
	L798_05086	Putative ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family. (2662 aa)
	L798_05290	DNA repair protein RAD51-like protein 3. (332 aa)
	L798_03406	Protein giant-lens. (139 aa)
	L798_02907	Cytoplasmic polyadenylation element-binding protein 1-A. (599 aa)
	L798_02406	Poly [ADP-ribose] polymerase. (142 aa)
	L798_02408	Poly [ADP-ribose] polymerase. (63 aa)
	L798_01244	Adenosine 3'-phospho 5'-phosphosulfate transporter 1. (448 aa)
	L798_15690	Uncharacterized protein. (543 aa)
	L798_15402	EGF-like domain-containing protein. (146 aa)
	L798_06431	Poly [ADP-ribose] polymerase 1. (93 aa)
	L798_08579	Poly [ADP-ribose] polymerase. (164 aa)
	L798_13808	Raf-like protein serine/threonine-protein kinase phl. (675 aa)
	L798_13068	Uncharacterized protein. (431 aa)
	L798_07592	Cornichon-like protein 4. (133 aa)
	L798_01418	Endoplasmic reticulum protein ERp29. (246 aa)
	L798_03048	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily. (383 aa)
	L798_02663	Uncharacterized protein. (652 aa)
	L798_04559	Poly [ADP-ribose] polymerase. (77 aa)
	L798_04069	Canopy-like protein 2. (199 aa)
	L798_15215	Trafficking kinesin-binding protein milt. (853 aa)
	L798_11554	Exonuclease 3'-5' domain-containing protein 1. (851 aa)
	L798_05437	A kinase anchor protein 1, mitochondrial. (817 aa)
	L798_15214	Trafficking kinesin-binding protein 1. (1141 aa)
	L798_07676	SHC-transforming protein 1. (444 aa)
	L798_14585	Cell cycle regulator Mat89Bb-like protein. (540 aa)
	L798_05713	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (745 aa)
	L798_03134	Dynein heavy chain, cytoplasmic. (4685 aa)
	L798_04558	Poly [ADP-ribose] polymerase 1. (244 aa)
	L798_09486	Helicase POLQ-like. (1168 aa)
	L798_03787	Protein cornichon. (144 aa)
	L798_04149	Dorsal-ventral patterning protein Sog. (835 aa)
	L798_09705	Ras GTPase-activating protein-binding protein 2. (651 aa)
	L798_09515	Uncharacterized protein. (140 aa)
	L798_05711	Calcium-independent protein kinase C. (90 aa)
	L798_05755	Segmentation protein cap'n'collar. (567 aa)
	L798_05157	NF-kappa-B inhibitor cactus. (154 aa)
	L798_07231	Uncharacterized protein. (1088 aa)
	L798_08755	Protein spaetzle. (215 aa)
	L798_09704	RNA-binding protein squid. (322 aa)
	L798_08754	Protein spaetzle. (203 aa)
	L798_13939	Mothers against decapentaplegic homolog. (688 aa)
	L798_08623	HMG box domain-containing protein. (1875 aa)
	L798_09756	DNA repair protein XRCC3. (379 aa)
	L798_11002	E3 ubiquitin-protein ligase CBL-B. (737 aa)
	L798_10697	Heterogeneous nuclear ribonucleoprotein H. (465 aa)
	L798_15274	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. (338 aa)
	L798_14513	COP9 signalosome complex subunit 5. (343 aa)
	L798_12052	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (162 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_02406	L798_13939	A0A067QHL0	A0A067R1V3	Poly [ADP-ribose] polymerase.	Mothers against decapentaplegic homolog.	0.417
L798_02408	L798_13939	A0A067QHZ9	A0A067R1V3	Poly [ADP-ribose] polymerase.	Mothers against decapentaplegic homolog.	0.417
L798_02663	L798_10697	A0A067RNL6	A0A067QZP9	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein H.	0.510
L798_02907	L798_13068	A0A067QGQ2	A0A067QSD0	Cytoplasmic polyadenylation element-binding protein 1-A.	Uncharacterized protein.	0.543
L798_02907	L798_15402	A0A067QGQ2	A0A067QLW4	Cytoplasmic polyadenylation element-binding protein 1-A.	EGF-like domain-containing protein.	0.403
L798_02907	L798_15672	A0A067QGQ2	A0A067QUS5	Cytoplasmic polyadenylation element-binding protein 1-A.	Protein bicaudal D.	0.499
L798_03134	L798_15672	A0A067RE92	A0A067QUS5	Dynein heavy chain, cytoplasmic.	Protein bicaudal D.	0.588
L798_04149	L798_13939	A0A067RCG0	A0A067R1V3	Dorsal-ventral patterning protein Sog.	Mothers against decapentaplegic homolog.	0.532
L798_04558	L798_08579	A0A067RE08	A0A067QRV3	Poly [ADP-ribose] polymerase 1.	Poly [ADP-ribose] polymerase.	0.926
L798_04558	L798_13939	A0A067RE08	A0A067R1V3	Poly [ADP-ribose] polymerase 1.	Mothers against decapentaplegic homolog.	0.417
L798_04559	L798_13939	A0A067RNF6	A0A067R1V3	Poly [ADP-ribose] polymerase.	Mothers against decapentaplegic homolog.	0.417
L798_05086	L798_13939	A0A067RUD8	A0A067R1V3	Putative ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family.	Mothers against decapentaplegic homolog.	0.829
L798_05157	L798_08755	A0A067R8C3	A0A067R4F3	NF-kappa-B inhibitor cactus.	Protein spaetzle.	0.402
L798_05157	L798_09515	A0A067R8C3	A0A067RAS6	NF-kappa-B inhibitor cactus.	Uncharacterized protein.	0.580
L798_05290	L798_09756	A0A067RU08	A0A067R166	DNA repair protein RAD51-like protein 3.	DNA repair protein XRCC3.	0.995
L798_05290	L798_15274	A0A067RU08	A0A067QZL1	DNA repair protein RAD51-like protein 3.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.976
L798_05711	L798_07676	A0A067R9Q2	A0A067RH42	Calcium-independent protein kinase C.	SHC-transforming protein 1.	0.465
L798_05713	L798_07676	A0A067RGJ8	A0A067RH42	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	SHC-transforming protein 1.	0.465
L798_06431	L798_13939	A0A067QPS6	A0A067R1V3	Poly [ADP-ribose] polymerase 1.	Mothers against decapentaplegic homolog.	0.417
L798_07676	L798_05711	A0A067RH42	A0A067R9Q2	SHC-transforming protein 1.	Calcium-independent protein kinase C.	0.465