49 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_14830	Casein kinase I isoform epsilon; Belongs to the protein kinase superfamily. (336 aa)
	L798_02480	Poly [ADP-ribose] polymerase. (1177 aa)
	L798_07111	Ubiquitin carboxyl-terminal hydrolase. (810 aa)
	L798_05069	Ankyrin repeat and IBR domain-containing protein 1. (969 aa)
	L798_08702	DET1-like protein. (556 aa)
	L798_07629	RBR-type E3 ubiquitin transferase. (704 aa)
	L798_05886	Growth factor receptor-bound protein 2. (373 aa)
	L798_05382	Cell division cycle protein 20-like protein. (173 aa)
	L798_02731	RBR-type E3 ubiquitin transferase. (459 aa)
	L798_01310	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. (475 aa)
	L798_08086	FERM domain-containing protein. (1317 aa)
	L798_01701	Putative proteasome inhibitor. (293 aa)
	L798_07225	Tribbles-like protein 2. (230 aa)
	L798_04583	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (166 aa)
	L798_05760	F-box/WD repeat-containing protein 1A. (506 aa)
	L798_10450	RBR-type E3 ubiquitin transferase. (327 aa)
	L798_07551	Ubiquitin fusion degradation protein 1-like protein. (301 aa)
	L798_06354	RBR-type E3 ubiquitin transferase. (507 aa)
	L798_06153	Zer-1-like protein. (770 aa)
	L798_10585	Zyg-11-like protein B. (746 aa)
	L798_10705	Transcription elongation factor B polypeptide 2. (115 aa)
	L798_12313	Cell division cycle protein 20-like protein. (169 aa)
	L798_08831	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	L798_11828	F-box-like/WD repeat-containing protein TBL1XR1. (495 aa)
	L798_12113	WD_REPEATS_REGION domain-containing protein. (323 aa)
	L798_09947	Fizzy-related protein-like protein. (101 aa)
	L798_12856	LisH domain-containing protein. (687 aa)
	L798_09864	E3 ubiquitin-protein ligase RFWD2. (641 aa)
	L798_10502	Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family. (455 aa)
	L798_10209	Cell division cycle protein 20-like protein. (497 aa)
	L798_11873	Fizzy-related protein-like protein. (71 aa)
	L798_14640	Cullin-2; Belongs to the cullin family. (744 aa)
	L798_11570	Cell division cycle protein 20-like protein. (159 aa)
	L798_11663	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. (729 aa)
	L798_11542	Fizzy-related protein-like protein. (74 aa)
	L798_10405	E3 ubiquitin-protein ligase HECTD1. (2759 aa)
	L798_00764	Putative E3 ubiquitin-protein ligase SH3RF1. (996 aa)
	L798_02211	Cell division cycle protein 20-like protein. (201 aa)
	L798_13211	Axin-1. (933 aa)
	L798_13899	Hsp70-binding protein 1. (360 aa)
	L798_02634	RMD5-like protein A. (392 aa)
	L798_13990	F-box only protein 22. (496 aa)
	L798_00852	RING finger protein 146. (295 aa)
	L798_00187	Fizzy-related protein-like protein. (443 aa)
	L798_01375	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family. (803 aa)
	L798_01746	DET1-and DDB1-associated protein 1. (129 aa)
	L798_01951	RBR-type E3 ubiquitin transferase. (646 aa)
	L798_03716	Fizzy-related protein-like protein. (162 aa)
	L798_04973	Cell division cycle protein 20-like protein. (88 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_00187	L798_12113	A0A067QLV2	A0A067R3Z0	Fizzy-related protein-like protein.	WD_REPEATS_REGION domain-containing protein.	0.901
L798_00764	L798_05760	A0A067QV46	A0A067R8E5	Putative E3 ubiquitin-protein ligase SH3RF1.	F-box/WD repeat-containing protein 1A.	0.642
L798_00764	L798_13899	A0A067QV46	A0A067QRK3	Putative E3 ubiquitin-protein ligase SH3RF1.	Hsp70-binding protein 1.	0.417
L798_00852	L798_01701	A0A067QMT5	A0A067RET4	RING finger protein 146.	Putative proteasome inhibitor.	0.431
L798_00852	L798_02480	A0A067QMT5	A0A067RRJ4	RING finger protein 146.	Poly [ADP-ribose] polymerase.	0.941
L798_00852	L798_13211	A0A067QMT5	A0A067QTE4	RING finger protein 146.	Axin-1.	0.854
L798_01310	L798_08831	A0A067RG71	A0A067R4Z3	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.463
L798_01375	L798_07551	A0A067QLL5	A0A067R875	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	Ubiquitin fusion degradation protein 1-like protein.	0.867
L798_01701	L798_00852	A0A067RET4	A0A067QMT5	Putative proteasome inhibitor.	RING finger protein 146.	0.431
L798_01701	L798_02480	A0A067RET4	A0A067RRJ4	Putative proteasome inhibitor.	Poly [ADP-ribose] polymerase.	0.506
L798_01701	L798_07551	A0A067RET4	A0A067R875	Putative proteasome inhibitor.	Ubiquitin fusion degradation protein 1-like protein.	0.742
L798_01746	L798_08702	A0A067QKI0	A0A067RKE9	DET1-and DDB1-associated protein 1.	DET1-like protein.	0.764
L798_01746	L798_09864	A0A067QKI0	A0A067R1R4	DET1-and DDB1-associated protein 1.	E3 ubiquitin-protein ligase RFWD2.	0.592
L798_01951	L798_02731	A0A067QI82	A0A067RGN9	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.411
L798_02211	L798_09947	A0A067QUV2	A0A067R340	Cell division cycle protein 20-like protein.	Fizzy-related protein-like protein.	0.900
L798_02211	L798_10209	A0A067QUV2	A0A067QYG4	Cell division cycle protein 20-like protein.	Cell division cycle protein 20-like protein.	0.910
L798_02211	L798_12313	A0A067QUV2	A0A067R6K2	Cell division cycle protein 20-like protein.	Cell division cycle protein 20-like protein.	0.950
L798_02480	L798_00852	A0A067RRJ4	A0A067QMT5	Poly [ADP-ribose] polymerase.	RING finger protein 146.	0.941
L798_02480	L798_01701	A0A067RRJ4	A0A067RET4	Poly [ADP-ribose] polymerase.	Putative proteasome inhibitor.	0.506
L798_02480	L798_13211	A0A067RRJ4	A0A067QTE4	Poly [ADP-ribose] polymerase.	Axin-1.	0.974