(17 nodes) Apoptotic cell clearance network (Zootermopsis nevadensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_01339	Rho-related BTB domain-containing protein 2. (694 aa)
	L798_03907	Ectodysplasin-A; Belongs to the tumor necrosis factor family. (454 aa)
	L798_03972	Sorting nexin; Involved in several stages of intracellular trafficking. (406 aa)
	L798_04864	XK-related protein. (806 aa)
	L798_06929	Mitogen-activated protein kinase. (406 aa)
	L798_03035	XK-related protein. (1041 aa)
	L798_01715	Tyrosine-protein kinase. (782 aa)
	L798_04776	Scavenger receptor class B member 1; Belongs to the CD36 family. (541 aa)
	L798_10988	Ras-related protein Rab-14. (215 aa)
	L798_07465	XK-related protein. (371 aa)
	L798_11513	Multiple epidermal growth factor-like domains 11. (953 aa)
	L798_07464	XK-related protein. (424 aa)
	L798_15799	Dual specificity mitogen-activated protein kinase kinase 7. (500 aa)
	L798_02672	XK-related protein. (478 aa)
	L798_15800	Dual specificity mitogen-activated protein kinase kinase hemipterous. (275 aa)
	L798_15765	Mitogen-activated protein kinase kinase kinase 4. (1189 aa)
	L798_13594	PTB domain-containing engulfment adapter protein 1. (395 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_01339	L798_06929	A0A067QTG6	A0A067RGE7	Rho-related BTB domain-containing protein 2.	Mitogen-activated protein kinase.	0.460
L798_01715	L798_11513	A0A067RCG7	A0A067R5X8	Tyrosine-protein kinase.	Multiple epidermal growth factor-like domains 11.	0.634
L798_03907	L798_06929	A0A067RNY6	A0A067RGE7	Ectodysplasin-A; Belongs to the tumor necrosis factor family.	Mitogen-activated protein kinase.	0.670
L798_06929	L798_01339	A0A067RGE7	A0A067QTG6	Mitogen-activated protein kinase.	Rho-related BTB domain-containing protein 2.	0.460
L798_06929	L798_03907	A0A067RGE7	A0A067RNY6	Mitogen-activated protein kinase.	Ectodysplasin-A; Belongs to the tumor necrosis factor family.	0.670
L798_06929	L798_15799	A0A067RGE7	A0A067QVM2	Mitogen-activated protein kinase.	Dual specificity mitogen-activated protein kinase kinase 7.	0.986
L798_06929	L798_15800	A0A067RGE7	A0A067QL43	Mitogen-activated protein kinase.	Dual specificity mitogen-activated protein kinase kinase hemipterous.	0.853
L798_11513	L798_01715	A0A067R5X8	A0A067RCG7	Multiple epidermal growth factor-like domains 11.	Tyrosine-protein kinase.	0.634
L798_11513	L798_13594	A0A067R5X8	A0A067QRE7	Multiple epidermal growth factor-like domains 11.	PTB domain-containing engulfment adapter protein 1.	0.732
L798_13594	L798_11513	A0A067QRE7	A0A067R5X8	PTB domain-containing engulfment adapter protein 1.	Multiple epidermal growth factor-like domains 11.	0.732
L798_15799	L798_06929	A0A067QVM2	A0A067RGE7	Dual specificity mitogen-activated protein kinase kinase 7.	Mitogen-activated protein kinase.	0.986
L798_15800	L798_06929	A0A067QL43	A0A067RGE7	Dual specificity mitogen-activated protein kinase kinase hemipterous.	Mitogen-activated protein kinase.	0.853