39 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_01002	Synaptojanin-1. (943 aa)
	L798_02671	Cullin-3-A; Belongs to the cullin family. (406 aa)
	L798_01375	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family. (803 aa)
	L798_15760	Putative E3 ubiquitin-protein ligase HERC4. (1091 aa)
	L798_00835	Uncharacterized protein. (167 aa)
	L798_14830	Casein kinase I isoform epsilon; Belongs to the protein kinase superfamily. (336 aa)
	L798_00034	Synaptojanin-1. (86 aa)
	L798_14293	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (444 aa)
	L798_14269	Cullin-3-A; Belongs to the cullin family. (191 aa)
	L798_01638	E3 ubiquitin-protein ligase. (859 aa)
	L798_00800	Protein patched. (1193 aa)
	L798_15290	DNA damage-binding protein 1. (1145 aa)
	L798_15024	E3 ubiquitin-protein ligase. (832 aa)
	L798_14833	E3 ubiquitin-protein ligase. (921 aa)
	L798_14838	Hepatocyte growth factor-regulated tyrosine kinase substrate; Essential role in endosome membrane invagination and formation of multivesicular bodies, MVBs. Required during gastrulation and appears to regulate early embryonic signaling pathways. Inhibits tyrosine kinase receptor signaling by promoting degradation of the tyrosine-phosphorylated, active receptor, potentially by sorting activated receptors into MVBs. The MVBs are then trafficked to the lysosome where their contents are degraded. (833 aa)
	L798_09910	Nuclear protein localization protein 4-like protein. (656 aa)
	L798_13795	Ubiquitin-conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family. (155 aa)
	L798_06937	Serine/threonine-protein phosphatase. (309 aa)
	L798_07227	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	L798_08497	Histone deacetylase Rpd3. (426 aa)
	L798_07551	Ubiquitin fusion degradation protein 1-like protein. (301 aa)
	L798_05760	F-box/WD repeat-containing protein 1A. (506 aa)
	L798_10715	Protein roadkill. (365 aa)
	L798_08430	Extracellular sulfatase SULF-1-like protein. (996 aa)
	L798_02705	NEDD8. (97 aa)
	L798_00467	Serine/threonine-protein kinase 36. (831 aa)
	L798_07542	Kinesin-like protein costa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1211 aa)
	L798_06936	Guanine nucleotide-binding protein subunit beta-2-like 1. (320 aa)
	L798_02085	Guanine nucleotide-binding protein subunit beta-2. (347 aa)
	L798_02498	Suppressor of fused homolog. (475 aa)
	L798_12716	Sentrin-specific protease 1. (676 aa)
	L798_06935	Guanine nucleotide-binding protein subunit beta-like protein. (317 aa)
	L798_14599	NEDD8-activating enzyme E1 catalytic subunit. (421 aa)
	L798_09214	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1. (343 aa)
	L798_05054	Phosphatidylinositide phosphatase SAC1-B. (589 aa)
	L798_02793	NEDD8-conjugating enzyme Ubc12; Belongs to the ubiquitin-conjugating enzyme family. (182 aa)
	L798_12804	Serine/threonine-protein phosphatase 4 regulatory subunit 2. (549 aa)
	L798_15124	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform. (591 aa)
	L798_09208	Arginine-glutamic acid dipeptide repeats protein. (2148 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_00467	L798_02498	A0A067RDF7	A0A067RET7	Serine/threonine-protein kinase 36.	Suppressor of fused homolog.	0.969
L798_00467	L798_07542	A0A067RDF7	A0A067RDQ8	Serine/threonine-protein kinase 36.	Kinesin-like protein costa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.959
L798_00800	L798_01638	A0A067QSK1	A0A067QS49	Protein patched.	E3 ubiquitin-protein ligase.	0.587
L798_00800	L798_02498	A0A067QSK1	A0A067RET7	Protein patched.	Suppressor of fused homolog.	0.738
L798_00800	L798_07542	A0A067QSK1	A0A067RDQ8	Protein patched.	Kinesin-like protein costa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.603
L798_00800	L798_14833	A0A067QSK1	A0A067R094	Protein patched.	E3 ubiquitin-protein ligase.	0.979
L798_00800	L798_15024	A0A067QSK1	A0A067QYB2	Protein patched.	E3 ubiquitin-protein ligase.	0.550
L798_01002	L798_05054	A0A067RG31	A0A067RL58	Synaptojanin-1.	Phosphatidylinositide phosphatase SAC1-B.	0.928
L798_01375	L798_02671	A0A067QLL5	A0A067QJL9	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	Cullin-3-A; Belongs to the cullin family.	0.553
L798_01375	L798_07551	A0A067QLL5	A0A067R875	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	Ubiquitin fusion degradation protein 1-like protein.	0.867
L798_01375	L798_09910	A0A067QLL5	A0A067R112	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	Nuclear protein localization protein 4-like protein.	0.993
L798_01375	L798_14269	A0A067QLL5	A0A067QPV5	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	Cullin-3-A; Belongs to the cullin family.	0.553
L798_01638	L798_00800	A0A067QS49	A0A067QSK1	E3 ubiquitin-protein ligase.	Protein patched.	0.587
L798_01638	L798_02705	A0A067QS49	A0A067RD15	E3 ubiquitin-protein ligase.	NEDD8.	0.423
L798_01638	L798_07227	A0A067QS49	A0A067R5A9	E3 ubiquitin-protein ligase.	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.468
L798_01638	L798_13795	A0A067QS49	A0A067R2G7	E3 ubiquitin-protein ligase.	Ubiquitin-conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family.	0.468
L798_01638	L798_14833	A0A067QS49	A0A067R094	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.900
L798_01638	L798_14838	A0A067QS49	A0A067R0B4	E3 ubiquitin-protein ligase.	Hepatocyte growth factor-regulated tyrosine kinase substrate; Essential role in endosome membrane invagination and formation of multivesicular bodies, MVBs. Required during gastrulation and appears to regulate early embryonic signaling pathways. Inhibits tyrosine kinase receptor signaling by promoting degradation of the tyrosine-phosphorylated, active receptor, potentially by sorting activated receptors into MVBs. The MVBs are then trafficked to the lysosome where their contents are degraded.	0.562
L798_02085	L798_14293	A0A067RE58	A0A067QPB3	Guanine nucleotide-binding protein subunit beta-2.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.739
L798_02498	L798_00467	A0A067RET7	A0A067RDF7	Suppressor of fused homolog.	Serine/threonine-protein kinase 36.	0.969