74 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_07193	Protein AF-9. (792 aa)
	L798_14715	Transcription initiation factor TFIID subunit 4. (1072 aa)
	L798_07726	Transcription factor E2F4. (383 aa)
	L798_06691	Transcriptional enhancer factor TEF-1. (443 aa)
	L798_07279	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (582 aa)
	L798_03803	Mothers against decapentaplegic homolog. (473 aa)
	L798_09302	Transcription initiation factor IIA subunit 1. (391 aa)
	L798_09560	Retinoblastoma-like protein 2. (95 aa)
	L798_03990	Transcription factor AP-1. (269 aa)
	L798_08597	Cyclic AMP-dependent transcription factor ATF-6 beta. (437 aa)
	L798_04605	Uncharacterized protein. (48 aa)
	MED6	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (190 aa)
	L798_09573	Nuclear hormone receptor FTZ-F1 beta. (1004 aa)
	L798_10658	CCAAT/enhancer-binding protein gamma. (156 aa)
	L798_05119	Transcription initiation factor TFIID subunit 11. (253 aa)
	L798_05754	Uncharacterized protein. (81 aa)
	L798_10210	Achaete-scute complex protein T5. (478 aa)
	L798_06808	Protein pangolin, isoforms A/H/I. (78 aa)
	L798_12142	Uncharacterized protein. (550 aa)
	L798_10211	BHLH domain-containing protein. (248 aa)
	L798_07463	Nuclear transcription factor Y subunit gamma. (363 aa)
	L798_06983	General transcription factor IIH subunit 5. (73 aa)
	L798_06805	Protein pangolin, isoform J. (1004 aa)
	L798_07724	Transcription initiation factor TFIID subunit 2. (1276 aa)
	L798_06790	General transcription factor IIE subunit 1. (416 aa)
	L798_12038	TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L. (382 aa)
	L798_12084	Aryl hydrocarbon receptor nuclear translocator-like protein. (535 aa)
	L798_12143	Hypoxia-inducible factor 1 alpha. (258 aa)
	L798_13939	Mothers against decapentaplegic homolog. (688 aa)
	L798_13158	Nuclear transcription factor Y subunit beta. (205 aa)
	L798_09101	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (318 aa)
	L798_09771	Transcription initiation factor TFIID subunit 7. (440 aa)
	L798_13497	Transcription initiation factor TFIID subunit. (1908 aa)
	L798_09653	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	L798_14322	Transcription initiation factor TFIID subunit 5. (662 aa)
	L798_07082	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (264 aa)
	L798_15429	DNA excision repair protein haywire. (806 aa)
	L798_10586	Transcription initiation factor TFIID subunit 8. (281 aa)
	L798_00502	YEATS domain-containing protein 4. (229 aa)
	L798_11200	TATA-box-binding protein. (297 aa)
	L798_10212	Helix-loop-helix protein 6. (191 aa)
	L798_11805	Transcription initiation factor TFIID subunit 13. (126 aa)
	L798_12074	COP9 signalosome complex subunit 2. (449 aa)
	L798_12213	TFIIH basal transcription factor complex helicase subunit. (761 aa)
	MED8	Mediator of RNA polymerase II transcription subunit 8; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (262 aa)
	L798_14409	TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L. (540 aa)
	L798_14024	Mothers against decapentaplegic homolog. (470 aa)
	L798_14113	Retinoblastoma-like protein 1. (844 aa)
	L798_14993	Cell division protein kinase 7; Belongs to the protein kinase superfamily. (347 aa)
	L798_00339	65 kDa Yes-associated protein. (446 aa)
	L798_15068	Suppressor of hairless protein. (498 aa)
	L798_15281	Protein max. (173 aa)
	L798_00897	Mediator of RNA polymerase II transcription subunit 12. (2373 aa)
	L798_00191	Transcription factor E2F7. (778 aa)
	L798_00736	Cyclin-H; Belongs to the cyclin family. (333 aa)
	L798_01662	Transcription initiation factor TFIID subunit 9. (276 aa)
	L798_03403	Survival motor neuron protein. (293 aa)
	L798_02913	Mothers against decapentaplegic homolog. (308 aa)
	L798_04182	Ankyrin repeat domain-containing protein 17. (3090 aa)
	L798_12829	General transcription factor IIH subunit 3. (296 aa)
	L798_12760	Transcription initiation factor TFIID subunit 12. (254 aa)
	L798_12750	POTE ankyrin domain family member D. (2746 aa)
	L798_02544	Homeobox protein homothorax. (517 aa)
	L798_02859	Circadian locomoter output cycles protein kaput. (71 aa)
	L798_13005	Transcription initiation factor TFIID subunit 6. (640 aa)
	L798_05117	Transcription initiation factor IIE subunit beta. (252 aa)
	L798_04695	Uncharacterized protein. (128 aa)
	L798_06090	General transcription factor IIH subunit 1. (562 aa)
	L798_14979	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (144 aa)
	L798_07319	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (117 aa)
	L798_12728	Protein big brother. (206 aa)
	L798_07107	General transcription factor IIH subunit. (414 aa)
	L798_15194	Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (2111 aa)
	L798_06544	Uncharacterized protein. (177 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_00191	L798_09560	A0A067QLF2	A0A067RCH7	Transcription factor E2F7.	Retinoblastoma-like protein 2.	0.560
L798_00191	L798_14113	A0A067QLF2	A0A067QPM2	Transcription factor E2F7.	Retinoblastoma-like protein 1.	0.560
L798_00339	L798_02544	A0A067QNF7	A0A067RN75	65 kDa Yes-associated protein.	Homeobox protein homothorax.	0.574
L798_00339	L798_02913	A0A067QNF7	A0A067QH14	65 kDa Yes-associated protein.	Mothers against decapentaplegic homolog.	0.717
L798_00339	L798_03803	A0A067QNF7	A0A067RF95	65 kDa Yes-associated protein.	Mothers against decapentaplegic homolog.	0.610
L798_00339	L798_03990	A0A067QNF7	A0A067RC76	65 kDa Yes-associated protein.	Transcription factor AP-1.	0.435
L798_00339	L798_06691	A0A067QNF7	A0A067RFV2	65 kDa Yes-associated protein.	Transcriptional enhancer factor TEF-1.	0.989
L798_00339	L798_12728	A0A067QNF7	A0A067RHV0	65 kDa Yes-associated protein.	Protein big brother.	0.637
L798_00339	L798_13939	A0A067QNF7	A0A067R1V3	65 kDa Yes-associated protein.	Mothers against decapentaplegic homolog.	0.783
L798_00339	L798_14024	A0A067QNF7	A0A067QRP6	65 kDa Yes-associated protein.	Mothers against decapentaplegic homolog.	0.610
L798_00502	L798_04605	A0A067QXQ0	A0A067RA32	YEATS domain-containing protein 4.	Uncharacterized protein.	0.613
L798_00502	L798_07082	A0A067QXQ0	A0A067RTL9	YEATS domain-containing protein 4.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.674
L798_00502	L798_07279	A0A067QXQ0	A0A067RFB0	YEATS domain-containing protein 4.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.666
L798_00502	L798_07724	A0A067QXQ0	A0A067R4M3	YEATS domain-containing protein 4.	Transcription initiation factor TFIID subunit 2.	0.503
L798_00502	L798_09771	A0A067QXQ0	A0A067R178	YEATS domain-containing protein 4.	Transcription initiation factor TFIID subunit 7.	0.430
L798_00502	L798_10586	A0A067QXQ0	A0A067QYI5	YEATS domain-containing protein 4.	Transcription initiation factor TFIID subunit 8.	0.453
L798_00502	L798_11805	A0A067QXQ0	A0A067QVU2	YEATS domain-containing protein 4.	Transcription initiation factor TFIID subunit 13.	0.456
L798_00502	L798_12038	A0A067QXQ0	A0A067R3W1	YEATS domain-containing protein 4.	TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L.	0.584
L798_00502	L798_13497	A0A067QXQ0	A0A067R0X8	YEATS domain-containing protein 4.	Transcription initiation factor TFIID subunit.	0.511
L798_00502	L798_14979	A0A067QXQ0	A0A067RI97	YEATS domain-containing protein 4.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.432