20 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_04287	Transcription elongation factor SPT6. (1719 aa)
	L798_04559	Poly [ADP-ribose] polymerase. (77 aa)
	L798_07948	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (960 aa)
	L798_05389	Uncharacterized protein. (684 aa)
	L798_08473	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (683 aa)
	L798_04558	Poly [ADP-ribose] polymerase 1. (244 aa)
	L798_07645	RNA-binding protein squid. (278 aa)
	L798_08464	ATP-dependent RNA helicase p62; Belongs to the DEAD box helicase family. (560 aa)
	L798_09899	Chromodomain-helicase-DNA-binding protein 1. (1862 aa)
	L798_05755	Segmentation protein cap'n'collar. (567 aa)
	L798_08472	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (375 aa)
	L798_08467	Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (422 aa)
	L798_08465	Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (720 aa)
	L798_09704	RNA-binding protein squid. (322 aa)
	L798_13828	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (676 aa)
	L798_12213	TFIIH basal transcription factor complex helicase subunit. (761 aa)
	L798_08579	Poly [ADP-ribose] polymerase. (164 aa)
	L798_06431	Poly [ADP-ribose] polymerase 1. (93 aa)
	L798_02408	Poly [ADP-ribose] polymerase. (63 aa)
	L798_02406	Poly [ADP-ribose] polymerase. (142 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_04287	L798_05389	A0A067QFM3	A0A067RHY7	Transcription elongation factor SPT6.	Uncharacterized protein.	0.806
L798_04287	L798_09899	A0A067QFM3	A0A067RA71	Transcription elongation factor SPT6.	Chromodomain-helicase-DNA-binding protein 1.	0.714
L798_04558	L798_08579	A0A067RE08	A0A067QRV3	Poly [ADP-ribose] polymerase 1.	Poly [ADP-ribose] polymerase.	0.926
L798_05389	L798_04287	A0A067RHY7	A0A067QFM3	Uncharacterized protein.	Transcription elongation factor SPT6.	0.806
L798_05755	L798_09899	A0A067R8E0	A0A067RA71	Segmentation protein cap'n'collar.	Chromodomain-helicase-DNA-binding protein 1.	0.414
L798_07645	L798_09704	A0A067RDN2	A0A067R2U5	RNA-binding protein squid.	RNA-binding protein squid.	0.902
L798_08464	L798_08472	A0A067RCE2	A0A067R5K3	ATP-dependent RNA helicase p62; Belongs to the DEAD box helicase family.	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.901
L798_08464	L798_13828	A0A067RCE2	A0A067QTL2	ATP-dependent RNA helicase p62; Belongs to the DEAD box helicase family.	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.901
L798_08472	L798_08464	A0A067R5K3	A0A067RCE2	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase p62; Belongs to the DEAD box helicase family.	0.901
L798_08472	L798_13828	A0A067R5K3	A0A067QTL2	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.901
L798_08579	L798_04558	A0A067QRV3	A0A067RE08	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase 1.	0.926
L798_09704	L798_07645	A0A067R2U5	A0A067RDN2	RNA-binding protein squid.	RNA-binding protein squid.	0.902
L798_09899	L798_04287	A0A067RA71	A0A067QFM3	Chromodomain-helicase-DNA-binding protein 1.	Transcription elongation factor SPT6.	0.714
L798_09899	L798_05755	A0A067RA71	A0A067R8E0	Chromodomain-helicase-DNA-binding protein 1.	Segmentation protein cap'n'collar.	0.414
L798_13828	L798_08464	A0A067QTL2	A0A067RCE2	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase p62; Belongs to the DEAD box helicase family.	0.901
L798_13828	L798_08472	A0A067QTL2	A0A067R5K3	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.901