32 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_03566	F-box/LRR-repeat protein 7. (589 aa)
	L798_01487	Putative RNA-binding protein EEED8.10. (501 aa)
	L798_13762	F-box domain-containing protein. (704 aa)
	L798_12546	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (162 aa)
	L798_11633	F-box/LRR-repeat protein 16. (532 aa)
	L798_01113	Ubiquitin carrier protein E2 28. (415 aa)
	L798_15249	F-box/LRR-repeat protein 14. (437 aa)
	L798_14544	Cullin-1; Belongs to the cullin family. (769 aa)
	L798_14174	F-box/LRR-repeat protein 6. (490 aa)
	L798_08490	Uncharacterized protein. (357 aa)
	L798_13763	F-box/LRR-repeat protein 5. (642 aa)
	L798_09452	RING-box protein 1. (113 aa)
	L798_05760	F-box/WD repeat-containing protein 1A. (506 aa)
	L798_10095	F-box/LRR-repeat protein 21. (406 aa)
	L798_10961	F-box only protein 42. (515 aa)
	L798_05104	F-box only protein 28. (514 aa)
	L798_05729	F-box/LRR-repeat protein 2. (487 aa)
	L798_03685	S-phase kinase-associated protein 2. (480 aa)
	L798_10119	F-box domain-containing protein. (490 aa)
	L798_05333	Uncharacterized protein. (365 aa)
	L798_05577	JmjC domain-containing histone demethylation protein 1. (1108 aa)
	L798_13570	F-box/LRR-repeat protein 4. (619 aa)
	L798_01088	F-box/LRR-repeat protein 2. (483 aa)
	L798_08958	F-box/LRR-repeat protein 2. (522 aa)
	L798_09389	F-box only protein 37. (268 aa)
	L798_01954	F-box only protein 9. (475 aa)
	L798_14530	F-box/LRR-repeat protein 2. (419 aa)
	L798_15026	Uncharacterized protein. (222 aa)
	L798_00646	Leucine-rich repeat-containing protein 29. (706 aa)
	L798_02042	F-box/LRR-repeat protein 14. (588 aa)
	L798_01848	Uncharacterized protein. (185 aa)
	L798_06481	F-box/LRR-repeat protein 20. (405 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_00646	L798_12546	A0A067QMJ0	A0A067QU85	Leucine-rich repeat-containing protein 29.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.543
L798_01088	L798_03685	A0A067RRI1	A0A067RBG1	F-box/LRR-repeat protein 2.	S-phase kinase-associated protein 2.	0.545
L798_01088	L798_09452	A0A067RRI1	A0A067R3E4	F-box/LRR-repeat protein 2.	RING-box protein 1.	0.543
L798_01088	L798_12546	A0A067RRI1	A0A067QU85	F-box/LRR-repeat protein 2.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.671
L798_01088	L798_14544	A0A067RRI1	A0A067R1K7	F-box/LRR-repeat protein 2.	Cullin-1; Belongs to the cullin family.	0.609
L798_01113	L798_03685	A0A067QWY6	A0A067RBG1	Ubiquitin carrier protein E2 28.	S-phase kinase-associated protein 2.	0.459
L798_01113	L798_05760	A0A067QWY6	A0A067R8E5	Ubiquitin carrier protein E2 28.	F-box/WD repeat-containing protein 1A.	0.671
L798_01113	L798_09452	A0A067QWY6	A0A067R3E4	Ubiquitin carrier protein E2 28.	RING-box protein 1.	0.807
L798_01113	L798_12546	A0A067QWY6	A0A067QU85	Ubiquitin carrier protein E2 28.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.687
L798_01113	L798_14544	A0A067QWY6	A0A067R1K7	Ubiquitin carrier protein E2 28.	Cullin-1; Belongs to the cullin family.	0.597
L798_01487	L798_12546	A0A067QTC0	A0A067QU85	Putative RNA-binding protein EEED8.10.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.543
L798_01848	L798_12546	A0A067QIF1	A0A067QU85	Uncharacterized protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.543
L798_01954	L798_05577	A0A067QSD7	A0A067RKS9	F-box only protein 9.	JmjC domain-containing histone demethylation protein 1.	0.734
L798_01954	L798_09452	A0A067QSD7	A0A067R3E4	F-box only protein 9.	RING-box protein 1.	0.525
L798_01954	L798_12546	A0A067QSD7	A0A067QU85	F-box only protein 9.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.978
L798_01954	L798_14544	A0A067QSD7	A0A067R1K7	F-box only protein 9.	Cullin-1; Belongs to the cullin family.	0.828
L798_02042	L798_12546	A0A067QKD9	A0A067QU85	F-box/LRR-repeat protein 14.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.543
L798_03566	L798_09452	A0A067QT01	A0A067R3E4	F-box/LRR-repeat protein 7.	RING-box protein 1.	0.702
L798_03566	L798_12546	A0A067QT01	A0A067QU85	F-box/LRR-repeat protein 7.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.796
L798_03566	L798_14544	A0A067QT01	A0A067R1K7	F-box/LRR-repeat protein 7.	Cullin-1; Belongs to the cullin family.	0.712