46 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_06967	Serine-protein kinase ATM; Belongs to the PI3/PI4-kinase family. (2066 aa)
	L798_11781	Tumor suppressor p53-binding protein 1. (1553 aa)
	L798_10113	Double-strand break repair protein MRE11A. (76 aa)
	L798_05606	Serine/threonine-protein kinase Chk2. (456 aa)
	L798_02126	E3 ubiquitin-protein ligase RNF8. (254 aa)
	L798_15108	Uncharacterized protein. (160 aa)
	L798_03122	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	L798_13865	Uncharacterized protein. (106 aa)
	L798_01612	Small ubiquitin-related modifier. (97 aa)
	L798_04179	BRCA1-A complex subunit BRE. (388 aa)
	L798_11449	Uncharacterized protein. (161 aa)
	L798_01850	Ubiquitin. (229 aa)
	L798_12215	Lys-63-specific deubiquitinase BRCC36. (263 aa)
	L798_11187	Uncharacterized protein. (115 aa)
	L798_14995	Ubiquitin. (230 aa)
	L798_12179	Ubiquitin. (77 aa)
	L798_12186	Uncharacterized protein. (165 aa)
	L798_02501	E3 ubiquitin-protein ligase RNF8. (97 aa)
	L798_14792	Uncharacterized protein. (164 aa)
	L798_01187	Uncharacterized protein. (116 aa)
	L798_13237	Uncharacterized protein. (117 aa)
	L798_07584	E3 ubiquitin-protein ligase RNF8 A. (542 aa)
	L798_05101	Craniofacial development protein 2. (227 aa)
	L798_04869	Tyrosine-protein kinase Abl. (1683 aa)
	L798_05064	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (529 aa)
	L798_14167	Craniofacial development protein 2. (140 aa)
	L798_12384	Ankyrin repeat domain-containing protein 11. (744 aa)
	L798_12802	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (463 aa)
	L798_07020	Double-strand break repair protein MRE11. (153 aa)
	L798_05836	E3 ubiquitin-protein ligase RNF168. (653 aa)
	L798_03144	Breast cancer type 1 susceptibility protein-like protein. (650 aa)
	L798_06966	Serine-protein kinase ATM. (219 aa)
	L798_00484	Uncharacterized protein. (161 aa)
	L798_10034	Gamma-glutamylcyclotransferase. (179 aa)
	L798_09841	Uncharacterized protein. (139 aa)
	L798_06657	Uncharacterized protein. (172 aa)
	L798_07359	Uncharacterized protein. (879 aa)
	L798_12216	Lys-63-specific deubiquitinase BRCC36. (107 aa)
	L798_07447	KxDL domain-containing protein. (222 aa)
	L798_08005	BRCA1-A complex subunit MERIT40. (332 aa)
	L798_08319	Uncharacterized protein. (174 aa)
	L798_09068	Uncharacterized protein. (145 aa)
	L798_09937	Uncharacterized protein. (149 aa)
	L798_14243	DNA repair protein RAD50. (1311 aa)
	L798_14458	Uncharacterized protein. (141 aa)
	L798_15354	Chromatin-remodeling complex ATPase chain Iswi. (1042 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_00484	L798_03144	A0A067RDT2	A0A067REA2	Uncharacterized protein.	Breast cancer type 1 susceptibility protein-like protein.	0.574
L798_00484	L798_04179	A0A067RDT2	A0A067QST8	Uncharacterized protein.	BRCA1-A complex subunit BRE.	0.630
L798_00484	L798_08005	A0A067RDT2	A0A067R4I8	Uncharacterized protein.	BRCA1-A complex subunit MERIT40.	0.629
L798_00484	L798_12215	A0A067RDT2	A0A067QVS0	Uncharacterized protein.	Lys-63-specific deubiquitinase BRCC36.	0.547
L798_00484	L798_12216	A0A067RDT2	A0A067R5B0	Uncharacterized protein.	Lys-63-specific deubiquitinase BRCC36.	0.547
L798_01187	L798_03144	A0A067RNX5	A0A067REA2	Uncharacterized protein.	Breast cancer type 1 susceptibility protein-like protein.	0.574
L798_01187	L798_04179	A0A067RNX5	A0A067QST8	Uncharacterized protein.	BRCA1-A complex subunit BRE.	0.630
L798_01187	L798_08005	A0A067RNX5	A0A067R4I8	Uncharacterized protein.	BRCA1-A complex subunit MERIT40.	0.629
L798_01187	L798_12215	A0A067RNX5	A0A067QVS0	Uncharacterized protein.	Lys-63-specific deubiquitinase BRCC36.	0.547
L798_01187	L798_12216	A0A067RNX5	A0A067R5B0	Uncharacterized protein.	Lys-63-specific deubiquitinase BRCC36.	0.547
L798_01612	L798_01850	A0A067QRY0	A0A067QVQ6	Small ubiquitin-related modifier.	Ubiquitin.	0.581
L798_01612	L798_03122	A0A067QRY0	A0A067QQ31	Small ubiquitin-related modifier.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.721
L798_01612	L798_03144	A0A067QRY0	A0A067REA2	Small ubiquitin-related modifier.	Breast cancer type 1 susceptibility protein-like protein.	0.473
L798_01612	L798_05836	A0A067QRY0	A0A067RFK1	Small ubiquitin-related modifier.	E3 ubiquitin-protein ligase RNF168.	0.466
L798_01612	L798_07020	A0A067QRY0	A0A067RHP0	Small ubiquitin-related modifier.	Double-strand break repair protein MRE11.	0.580
L798_01612	L798_10034	A0A067QRY0	A0A067R9R2	Small ubiquitin-related modifier.	Gamma-glutamylcyclotransferase.	0.560
L798_01612	L798_10113	A0A067QRY0	A0A067QEN6	Small ubiquitin-related modifier.	Double-strand break repair protein MRE11A.	0.580
L798_01612	L798_11781	A0A067QRY0	A0A067QXL7	Small ubiquitin-related modifier.	Tumor suppressor p53-binding protein 1.	0.725
L798_01612	L798_12179	A0A067QRY0	A0A067RUW4	Small ubiquitin-related modifier.	Ubiquitin.	0.592
L798_01612	L798_14243	A0A067QRY0	A0A067QZL2	Small ubiquitin-related modifier.	DNA repair protein RAD50.	0.488