40 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_07447	KxDL domain-containing protein. (222 aa)
	L798_12179	Ubiquitin. (77 aa)
	L798_02406	Poly [ADP-ribose] polymerase. (142 aa)
	L798_02408	Poly [ADP-ribose] polymerase. (63 aa)
	L798_00736	Cyclin-H; Belongs to the cyclin family. (333 aa)
	L798_14396	Uncharacterized protein. (188 aa)
	L798_14993	Cell division protein kinase 7; Belongs to the protein kinase superfamily. (347 aa)
	L798_06431	Poly [ADP-ribose] polymerase 1. (93 aa)
	L798_08579	Poly [ADP-ribose] polymerase. (164 aa)
	L798_01612	Small ubiquitin-related modifier. (97 aa)
	L798_12213	TFIIH basal transcription factor complex helicase subunit. (761 aa)
	L798_01850	Ubiquitin. (229 aa)
	L798_14995	Ubiquitin. (230 aa)
	L798_12077	DNA repair protein complementing XP-A cells-like protein. (293 aa)
	L798_15290	DNA damage-binding protein 1. (1145 aa)
	L798_00695	SUMO-conjugating enzyme UBC9-A; Belongs to the ubiquitin-conjugating enzyme family. (138 aa)
	L798_11683	Ubiquitin. (128 aa)
	L798_15067	DNA repair protein complementing XP-G cells. (1140 aa)
	L798_15429	DNA excision repair protein haywire. (806 aa)
	L798_09653	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	L798_10578	DNA repair endonuclease XPF. (896 aa)
	L798_10598	UV excision repair protein RAD23-like protein B. (366 aa)
	L798_09101	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (318 aa)
	L798_08803	Ubiquitin. (156 aa)
	L798_09452	RING-box protein 1. (113 aa)
	L798_06983	General transcription factor IIH subunit 5. (73 aa)
	L798_11523	E3 SUMO-protein ligase PIAS1. (636 aa)
	L798_09593	Replication protein A 14 kDa subunit. (116 aa)
	L798_10034	Gamma-glutamylcyclotransferase. (179 aa)
	L798_10442	Uncharacterized protein. (468 aa)
	L798_03288	Small ubiquitin-related modifier. (98 aa)
	L798_04558	Poly [ADP-ribose] polymerase 1. (244 aa)
	L798_06426	Uncharacterized protein. (215 aa)
	L798_07107	General transcription factor IIH subunit. (414 aa)
	L798_06090	General transcription factor IIH subunit 1. (562 aa)
	L798_04824	DNA repair protein complementing XP-C cells-like protein. (1088 aa)
	L798_00095	WD repeat-containing protein 76. (526 aa)
	L798_00096	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
	L798_04559	Poly [ADP-ribose] polymerase. (77 aa)
	L798_12829	General transcription factor IIH subunit 3. (296 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_00095	L798_00096	A0A067RKP6	A0A067RKT9	WD repeat-containing protein 76.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.684
L798_00095	L798_00736	A0A067RKP6	A0A067QJI2	WD repeat-containing protein 76.	Cyclin-H; Belongs to the cyclin family.	0.590
L798_00095	L798_01612	A0A067RKP6	A0A067QRY0	WD repeat-containing protein 76.	Small ubiquitin-related modifier.	0.447
L798_00095	L798_02406	A0A067RKP6	A0A067QHL0	WD repeat-containing protein 76.	Poly [ADP-ribose] polymerase.	0.400
L798_00095	L798_02408	A0A067RKP6	A0A067QHZ9	WD repeat-containing protein 76.	Poly [ADP-ribose] polymerase.	0.400
L798_00095	L798_03288	A0A067RKP6	A0A067RDY7	WD repeat-containing protein 76.	Small ubiquitin-related modifier.	0.447
L798_00095	L798_04558	A0A067RKP6	A0A067RE08	WD repeat-containing protein 76.	Poly [ADP-ribose] polymerase 1.	0.400
L798_00095	L798_04559	A0A067RKP6	A0A067RNF6	WD repeat-containing protein 76.	Poly [ADP-ribose] polymerase.	0.400
L798_00095	L798_04824	A0A067RKP6	A0A067RKD8	WD repeat-containing protein 76.	DNA repair protein complementing XP-C cells-like protein.	0.867
L798_00095	L798_06090	A0A067RKP6	A0A067RJ16	WD repeat-containing protein 76.	General transcription factor IIH subunit 1.	0.514
L798_00095	L798_06426	A0A067RKP6	A0A067RFU8	WD repeat-containing protein 76.	Uncharacterized protein.	0.400
L798_00095	L798_06431	A0A067RKP6	A0A067QPS6	WD repeat-containing protein 76.	Poly [ADP-ribose] polymerase 1.	0.400
L798_00095	L798_07107	A0A067RKP6	A0A067RH91	WD repeat-containing protein 76.	General transcription factor IIH subunit.	0.528
L798_00095	L798_08579	A0A067RKP6	A0A067QRV3	WD repeat-containing protein 76.	Poly [ADP-ribose] polymerase.	0.400
L798_00095	L798_08803	A0A067RKP6	A0A067R2I5	WD repeat-containing protein 76.	Ubiquitin.	0.484
L798_00095	L798_09101	A0A067RKP6	A0A067R1E3	WD repeat-containing protein 76.	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.	0.541
L798_00095	L798_09452	A0A067RKP6	A0A067R3E4	WD repeat-containing protein 76.	RING-box protein 1.	0.712
L798_00095	L798_09593	A0A067RKP6	A0A067R9A9	WD repeat-containing protein 76.	Replication protein A 14 kDa subunit.	0.559
L798_00095	L798_10034	A0A067RKP6	A0A067R9R2	WD repeat-containing protein 76.	Gamma-glutamylcyclotransferase.	0.484
L798_00095	L798_10442	A0A067RKP6	A0A067RAZ3	WD repeat-containing protein 76.	Uncharacterized protein.	0.684