18 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_07447	KxDL domain-containing protein. (222 aa)
	L798_07743	Replication factor C subunit 5. (334 aa)
	L798_14995	Ubiquitin. (230 aa)
	L798_01850	Ubiquitin. (229 aa)
	L798_01172	Putative E3 ubiquitin-protein ligase HERC2. (1940 aa)
	L798_08397	RCC1 and BTB domain-containing protein 1. (532 aa)
	L798_10442	Uncharacterized protein. (468 aa)
	L798_06527	ATPase family AAA domain-containing protein 5. (354 aa)
	L798_10034	Gamma-glutamylcyclotransferase. (179 aa)
	L798_09604	DNA polymerase delta subunit 3. (484 aa)
	L798_09593	Replication protein A 14 kDa subunit. (116 aa)
	L798_02092	Replication factor C subunit 4. (361 aa)
	L798_12179	Ubiquitin. (77 aa)
	L798_14749	Replication factor C subunit 3. (333 aa)
	L798_02831	Replication factor C subunit 2. (364 aa)
	L798_00096	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
	L798_06528	Uncharacterized protein. (257 aa)
	L798_06177	Replication factor C subunit 1. (1005 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_00096	L798_01850	A0A067RKT9	A0A067QVQ6	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Ubiquitin.	0.403
L798_00096	L798_02092	A0A067RKT9	A0A067RGL1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Replication factor C subunit 4.	0.792
L798_00096	L798_02831	A0A067RKT9	A0A067RQC0	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Replication factor C subunit 2.	0.777
L798_00096	L798_06177	A0A067RKT9	A0A067RH56	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Replication factor C subunit 1.	0.844
L798_00096	L798_06527	A0A067RKT9	A0A067R9X0	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	ATPase family AAA domain-containing protein 5.	0.595
L798_00096	L798_06528	A0A067RKT9	A0A067RJD7	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Uncharacterized protein.	0.595
L798_00096	L798_07743	A0A067RKT9	A0A067R4E7	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Replication factor C subunit 5.	0.708
L798_00096	L798_09593	A0A067RKT9	A0A067R9A9	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Replication protein A 14 kDa subunit.	0.997
L798_00096	L798_09604	A0A067RKT9	A0A067R9B5	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	DNA polymerase delta subunit 3.	0.509
L798_00096	L798_14749	A0A067RKT9	A0A067RSU6	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Replication factor C subunit 3.	0.702
L798_00096	L798_14995	A0A067RKT9	A0A067QWD5	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Ubiquitin.	0.403
L798_01850	L798_00096	A0A067QVQ6	A0A067RKT9	Ubiquitin.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.403
L798_01850	L798_02092	A0A067QVQ6	A0A067RGL1	Ubiquitin.	Replication factor C subunit 4.	0.484
L798_01850	L798_02831	A0A067QVQ6	A0A067RQC0	Ubiquitin.	Replication factor C subunit 2.	0.484
L798_01850	L798_06177	A0A067QVQ6	A0A067RH56	Ubiquitin.	Replication factor C subunit 1.	0.495
L798_01850	L798_07447	A0A067QVQ6	A0A067R580	Ubiquitin.	KxDL domain-containing protein.	0.460
L798_01850	L798_07743	A0A067QVQ6	A0A067R4E7	Ubiquitin.	Replication factor C subunit 5.	0.484
L798_01850	L798_10034	A0A067QVQ6	A0A067R9R2	Ubiquitin.	Gamma-glutamylcyclotransferase.	0.675
L798_01850	L798_12179	A0A067QVQ6	A0A067RUW4	Ubiquitin.	Ubiquitin.	0.828
L798_01850	L798_14749	A0A067QVQ6	A0A067RSU6	Ubiquitin.	Replication factor C subunit 3.	0.484