35 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_12398	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (55 aa)
	L798_00043	DNA-directed RNA polymerase III subunit RPC2. (100 aa)
	L798_11669	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (132 aa)
	L798_13130	DNA-directed RNA polymerase III subunit RPC4. (406 aa)
	L798_00804	General transcription factor 3C polypeptide 1. (2085 aa)
	L798_11412	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	L798_11200	TATA-box-binding protein. (297 aa)
	L798_10968	General transcription factor 3C polypeptide 5. (495 aa)
	L798_00400	General transcription factor 3C polypeptide 6. (239 aa)
	L798_14253	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1137 aa)
	L798_07971	DNA-directed RNA polymerases I and III subunit RPAC1. (340 aa)
	L798_08122	General transcription factor 3C polypeptide 3. (920 aa)
	L798_11332	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	L798_11632	DNA-directed RNA polymerase III subunit RPC8. (207 aa)
	L798_08118	Transcription factor IIIB 90 kDa subunit. (211 aa)
	L798_06673	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1387 aa)
	L798_06884	DNA-directed RNA polymerase III subunit RPC5. (230 aa)
	L798_06374	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (310 aa)
	L798_09767	DNA-directed RNA polymerase III subunit RPC7. (232 aa)
	L798_08125	Transcription factor TFIIIB component B''-like protein. (1001 aa)
	L798_07165	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (601 aa)
	L798_03025	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (252 aa)
	L798_06446	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (507 aa)
	L798_03289	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	L798_06544	Uncharacterized protein. (177 aa)
	L798_05139	Transcription factor IIIA. (253 aa)
	L798_06110	TATA box-binding protein-like protein 1. (281 aa)
	L798_15220	DNA-directed RNA polymerase III subunit RPC9. (127 aa)
	L798_07628	Uncharacterized protein. (219 aa)
	L798_05528	General transcription factor 3C polypeptide 2. (2162 aa)
	L798_01891	TFIIIC_delta domain-containing protein. (673 aa)
	L798_03387	DNA-directed RNA polymerases I, II, and III subunit RPABC3. (95 aa)
	L798_03391	DNA-directed RNA polymerases I, II, and III subunit RPABC3. (109 aa)
	L798_01845	La protein-like protein. (380 aa)
	L798_10788	TFIIB-type domain-containing protein. (532 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_00043	L798_01891	A0A067QE99	A0A067RM60	DNA-directed RNA polymerase III subunit RPC2.	TFIIIC_delta domain-containing protein.	0.439
L798_00043	L798_03025	A0A067QE99	A0A067RE10	DNA-directed RNA polymerase III subunit RPC2.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.965
L798_00043	L798_03289	A0A067QE99	A0A067RG04	DNA-directed RNA polymerase III subunit RPC2.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.949
L798_00043	L798_03387	A0A067QE99	A0A067RME6	DNA-directed RNA polymerase III subunit RPC2.	DNA-directed RNA polymerases I, II, and III subunit RPABC3.	0.939
L798_00043	L798_03391	A0A067QE99	A0A067RPW6	DNA-directed RNA polymerase III subunit RPC2.	DNA-directed RNA polymerases I, II, and III subunit RPABC3.	0.820
L798_00043	L798_05528	A0A067QE99	A0A067RL08	DNA-directed RNA polymerase III subunit RPC2.	General transcription factor 3C polypeptide 2.	0.423
L798_00043	L798_06110	A0A067QE99	A0A067RJ31	DNA-directed RNA polymerase III subunit RPC2.	TATA box-binding protein-like protein 1.	0.611
L798_00043	L798_06374	A0A067QE99	A0A067R809	DNA-directed RNA polymerase III subunit RPC2.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.960
L798_00043	L798_06446	A0A067QE99	A0A067RF68	DNA-directed RNA polymerase III subunit RPC2.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.957
L798_00043	L798_06544	A0A067QE99	A0A067RGU3	DNA-directed RNA polymerase III subunit RPC2.	Uncharacterized protein.	0.664
L798_00043	L798_06673	A0A067QE99	A0A067R6B1	DNA-directed RNA polymerase III subunit RPC2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.986
L798_00043	L798_06884	A0A067QE99	A0A067R7N2	DNA-directed RNA polymerase III subunit RPC2.	DNA-directed RNA polymerase III subunit RPC5.	0.956
L798_00043	L798_07628	A0A067QE99	A0A067RK42	DNA-directed RNA polymerase III subunit RPC2.	Uncharacterized protein.	0.792
L798_00043	L798_07971	A0A067QE99	A0A067R338	DNA-directed RNA polymerase III subunit RPC2.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.978
L798_00043	L798_08118	A0A067QE99	A0A067R5Y8	DNA-directed RNA polymerase III subunit RPC2.	Transcription factor IIIB 90 kDa subunit.	0.786
L798_00043	L798_08122	A0A067QE99	A0A067R3Y9	DNA-directed RNA polymerase III subunit RPC2.	General transcription factor 3C polypeptide 3.	0.664
L798_00043	L798_08125	A0A067QE99	A0A067RCW0	DNA-directed RNA polymerase III subunit RPC2.	Transcription factor TFIIIB component B''-like protein.	0.847
L798_00043	L798_09767	A0A067QE99	A0A067RAN5	DNA-directed RNA polymerase III subunit RPC2.	DNA-directed RNA polymerase III subunit RPC7.	0.955
L798_00043	L798_10788	A0A067QE99	A0A067RUL4	DNA-directed RNA polymerase III subunit RPC2.	TFIIB-type domain-containing protein.	0.786
L798_00043	L798_10968	A0A067QE99	A0A067QXL9	DNA-directed RNA polymerase III subunit RPC2.	General transcription factor 3C polypeptide 5.	0.541