10 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_15602	Mitogen-activated protein kinase kinase kinase 7-interacting protein 2. (459 aa)
	L798_12179	Ubiquitin. (77 aa)
	L798_01309	TNF receptor-associated factor 6. (383 aa)
	L798_10034	Gamma-glutamylcyclotransferase. (179 aa)
	L798_07447	KxDL domain-containing protein. (222 aa)
	L798_08803	Ubiquitin. (156 aa)
	L798_01510	Mitogen-activated protein kinase kinase kinase 7-interacting protein 1. (504 aa)
	L798_01850	Ubiquitin. (229 aa)
	L798_14995	Ubiquitin. (230 aa)
	L798_11683	Ubiquitin. (128 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_01309	L798_01510	A0A067RFW6	A0A067QIQ1	TNF receptor-associated factor 6.	Mitogen-activated protein kinase kinase kinase 7-interacting protein 1.	0.992
L798_01309	L798_01850	A0A067RFW6	A0A067QVQ6	TNF receptor-associated factor 6.	Ubiquitin.	0.890
L798_01309	L798_08803	A0A067RFW6	A0A067R2I5	TNF receptor-associated factor 6.	Ubiquitin.	0.944
L798_01309	L798_10034	A0A067RFW6	A0A067R9R2	TNF receptor-associated factor 6.	Gamma-glutamylcyclotransferase.	0.609
L798_01309	L798_11683	A0A067RFW6	A0A067QXB3	TNF receptor-associated factor 6.	Ubiquitin.	0.806
L798_01309	L798_12179	A0A067RFW6	A0A067RUW4	TNF receptor-associated factor 6.	Ubiquitin.	0.806
L798_01309	L798_14995	A0A067RFW6	A0A067QWD5	TNF receptor-associated factor 6.	Ubiquitin.	0.890
L798_01309	L798_15602	A0A067RFW6	A0A067QYZ6	TNF receptor-associated factor 6.	Mitogen-activated protein kinase kinase kinase 7-interacting protein 2.	0.996
L798_01510	L798_01309	A0A067QIQ1	A0A067RFW6	Mitogen-activated protein kinase kinase kinase 7-interacting protein 1.	TNF receptor-associated factor 6.	0.992
L798_01510	L798_08803	A0A067QIQ1	A0A067R2I5	Mitogen-activated protein kinase kinase kinase 7-interacting protein 1.	Ubiquitin.	0.456
L798_01510	L798_15602	A0A067QIQ1	A0A067QYZ6	Mitogen-activated protein kinase kinase kinase 7-interacting protein 1.	Mitogen-activated protein kinase kinase kinase 7-interacting protein 2.	0.913
L798_01850	L798_01309	A0A067QVQ6	A0A067RFW6	Ubiquitin.	TNF receptor-associated factor 6.	0.890
L798_01850	L798_07447	A0A067QVQ6	A0A067R580	Ubiquitin.	KxDL domain-containing protein.	0.460
L798_01850	L798_08803	A0A067QVQ6	A0A067R2I5	Ubiquitin.	Ubiquitin.	0.912
L798_01850	L798_10034	A0A067QVQ6	A0A067R9R2	Ubiquitin.	Gamma-glutamylcyclotransferase.	0.675
L798_01850	L798_11683	A0A067QVQ6	A0A067QXB3	Ubiquitin.	Ubiquitin.	0.937
L798_01850	L798_12179	A0A067QVQ6	A0A067RUW4	Ubiquitin.	Ubiquitin.	0.828
L798_01850	L798_15602	A0A067QVQ6	A0A067QYZ6	Ubiquitin.	Mitogen-activated protein kinase kinase kinase 7-interacting protein 2.	0.730
L798_07447	L798_01850	A0A067R580	A0A067QVQ6	KxDL domain-containing protein.	Ubiquitin.	0.460
L798_07447	L798_08803	A0A067R580	A0A067R2I5	KxDL domain-containing protein.	Ubiquitin.	0.675