10 items (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SSPO	SCO-spondin. (4867 aa)
	GP9	Uncharacterized protein. (217 aa)
	ADAMTS13	Uncharacterized protein. (217 aa)
	LRRC26	LRRCT domain-containing protein. (317 aa)
	OTOGL	Otogelin like. (2267 aa)
	ENSMODP00000050673	Peptidase M12B domain-containing protein. (963 aa)
	ENSMODP00000050980	Uncharacterized protein. (3007 aa)
	PTPRQ	Protein tyrosine phosphatase receptor type Q. (3386 aa)
	GP1BA	LRRCT domain-containing protein. (658 aa)
	ENSMODP00000055077	Uncharacterized protein; Belongs to the multicopper oxidase family. (2248 aa)

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADAMTS13	ENSMODP00000050673	ENSMODP00000016233	ENSMODP00000050673	Uncharacterized protein.	Peptidase M12B domain-containing protein.	0.799
ADAMTS13	ENSMODP00000050980	ENSMODP00000016233	ENSMODP00000050980	Uncharacterized protein.	Uncharacterized protein.	0.446
ADAMTS13	ENSMODP00000055077	ENSMODP00000016233	ENSMODP00000055077	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.481
ADAMTS13	GP1BA	ENSMODP00000016233	ENSMODP00000053841	Uncharacterized protein.	LRRCT domain-containing protein.	0.443
ADAMTS13	SSPO	ENSMODP00000016233	ENSMODP00000003423	Uncharacterized protein.	SCO-spondin.	0.669
ENSMODP00000050673	ADAMTS13	ENSMODP00000050673	ENSMODP00000016233	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.799
ENSMODP00000050673	ENSMODP00000050980	ENSMODP00000050673	ENSMODP00000050980	Peptidase M12B domain-containing protein.	Uncharacterized protein.	0.446
ENSMODP00000050673	ENSMODP00000055077	ENSMODP00000050673	ENSMODP00000055077	Peptidase M12B domain-containing protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.481
ENSMODP00000050673	GP1BA	ENSMODP00000050673	ENSMODP00000053841	Peptidase M12B domain-containing protein.	LRRCT domain-containing protein.	0.443
ENSMODP00000050673	SSPO	ENSMODP00000050673	ENSMODP00000003423	Peptidase M12B domain-containing protein.	SCO-spondin.	0.669
ENSMODP00000050980	ADAMTS13	ENSMODP00000050980	ENSMODP00000016233	Uncharacterized protein.	Uncharacterized protein.	0.446
ENSMODP00000050980	ENSMODP00000050673	ENSMODP00000050980	ENSMODP00000050673	Uncharacterized protein.	Peptidase M12B domain-containing protein.	0.446
ENSMODP00000050980	ENSMODP00000055077	ENSMODP00000050980	ENSMODP00000055077	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.770
ENSMODP00000050980	GP1BA	ENSMODP00000050980	ENSMODP00000053841	Uncharacterized protein.	LRRCT domain-containing protein.	0.849
ENSMODP00000050980	GP9	ENSMODP00000050980	ENSMODP00000010458	Uncharacterized protein.	Uncharacterized protein.	0.613
ENSMODP00000055077	ADAMTS13	ENSMODP00000055077	ENSMODP00000016233	Uncharacterized protein; Belongs to the multicopper oxidase family.	Uncharacterized protein.	0.481
ENSMODP00000055077	ENSMODP00000050673	ENSMODP00000055077	ENSMODP00000050673	Uncharacterized protein; Belongs to the multicopper oxidase family.	Peptidase M12B domain-containing protein.	0.481
ENSMODP00000055077	ENSMODP00000050980	ENSMODP00000055077	ENSMODP00000050980	Uncharacterized protein; Belongs to the multicopper oxidase family.	Uncharacterized protein.	0.770
ENSMODP00000055077	GP1BA	ENSMODP00000055077	ENSMODP00000053841	Uncharacterized protein; Belongs to the multicopper oxidase family.	LRRCT domain-containing protein.	0.515
ENSMODP00000055077	GP9	ENSMODP00000055077	ENSMODP00000010458	Uncharacterized protein; Belongs to the multicopper oxidase family.	Uncharacterized protein.	0.565