(14 nodes) Mixed, incl. HCNGP-like protein, and Shu complex network (Monodelphis domestica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VPS9D1	VPS9 domain containing 1. (669 aa)
	CDK10	Cyclin dependent kinase 10; Belongs to the protein kinase superfamily. (367 aa)
	SWSAP1	Uncharacterized protein. (255 aa)
	MMP23B	Matrix metallopeptidase 23B. (394 aa)
	SAP30BP	Uncharacterized protein. (338 aa)
	F6ZF24_MONDO	Uncharacterized protein. (381 aa)
	CCNL1	Cyclin L1; Belongs to the cyclin family. (543 aa)
	EGR4	Early growth response 4. (485 aa)
	F6S1V1_MONDO	Uncharacterized protein; Belongs to the cyclin family. (399 aa)
	ENSMODP00000044354	Uncharacterized protein. (180 aa)
	LOC100010569	Protein kinase domain-containing protein. (773 aa)
	ZSWIM7	Zinc finger SWIM-type containing 7. (140 aa)
	DBNDD1	Uncharacterized protein. (161 aa)
	ENSMODP00000055376	Uncharacterized protein. (253 aa)

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNL1	CDK10	ENSMODP00000019596	ENSMODP00000004283	Cyclin L1; Belongs to the cyclin family.	Cyclin dependent kinase 10; Belongs to the protein kinase superfamily.	0.476
CCNL1	EGR4	ENSMODP00000019596	ENSMODP00000021165	Cyclin L1; Belongs to the cyclin family.	Early growth response 4.	0.703
CCNL1	LOC100010569	ENSMODP00000019596	ENSMODP00000045109	Cyclin L1; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.496
CDK10	CCNL1	ENSMODP00000004283	ENSMODP00000019596	Cyclin dependent kinase 10; Belongs to the protein kinase superfamily.	Cyclin L1; Belongs to the cyclin family.	0.476
CDK10	DBNDD1	ENSMODP00000004283	ENSMODP00000050617	Cyclin dependent kinase 10; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.404
CDK10	F6S1V1_MONDO	ENSMODP00000004283	ENSMODP00000027785	Cyclin dependent kinase 10; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the cyclin family.	0.484
CDK10	VPS9D1	ENSMODP00000004283	ENSMODP00000004271	Cyclin dependent kinase 10; Belongs to the protein kinase superfamily.	VPS9 domain containing 1.	0.404
DBNDD1	CDK10	ENSMODP00000050617	ENSMODP00000004283	Uncharacterized protein.	Cyclin dependent kinase 10; Belongs to the protein kinase superfamily.	0.404
DBNDD1	VPS9D1	ENSMODP00000050617	ENSMODP00000004271	Uncharacterized protein.	VPS9 domain containing 1.	0.526
EGR4	CCNL1	ENSMODP00000021165	ENSMODP00000019596	Early growth response 4.	Cyclin L1; Belongs to the cyclin family.	0.703
F6S1V1_MONDO	CDK10	ENSMODP00000027785	ENSMODP00000004283	Uncharacterized protein; Belongs to the cyclin family.	Cyclin dependent kinase 10; Belongs to the protein kinase superfamily.	0.484
F6S1V1_MONDO	LOC100010569	ENSMODP00000027785	ENSMODP00000045109	Uncharacterized protein; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.465
F6ZF24_MONDO	SWSAP1	ENSMODP00000013203	ENSMODP00000008079	Uncharacterized protein.	Uncharacterized protein.	0.622
LOC100010569	CCNL1	ENSMODP00000045109	ENSMODP00000019596	Protein kinase domain-containing protein.	Cyclin L1; Belongs to the cyclin family.	0.496
LOC100010569	F6S1V1_MONDO	ENSMODP00000045109	ENSMODP00000027785	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.465
LOC100010569	MMP23B	ENSMODP00000045109	ENSMODP00000008350	Protein kinase domain-containing protein.	Matrix metallopeptidase 23B.	0.524
MMP23B	LOC100010569	ENSMODP00000008350	ENSMODP00000045109	Matrix metallopeptidase 23B.	Protein kinase domain-containing protein.	0.524
SWSAP1	F6ZF24_MONDO	ENSMODP00000008079	ENSMODP00000013203	Uncharacterized protein.	Uncharacterized protein.	0.622
SWSAP1	ZSWIM7	ENSMODP00000008079	ENSMODP00000045970	Uncharacterized protein.	Zinc finger SWIM-type containing 7.	0.770
VPS9D1	CDK10	ENSMODP00000004271	ENSMODP00000004283	VPS9 domain containing 1.	Cyclin dependent kinase 10; Belongs to the protein kinase superfamily.	0.404