STRINGSTRING
RPRD1B RPRD1B CPSF4 CPSF4 F7BCW9_MONDO F7BCW9_MONDO ICE1 ICE1 PCF11 PCF11 F6V956_MONDO F6V956_MONDO ZC3H6 ZC3H6 SSU72 SSU72 ZC3H4 ZC3H4 CSTF3 CSTF3 CPSF1 CPSF1 ICE2 ICE2 WDR82 WDR82 PAPOLA PAPOLA NUDT21 NUDT21 DXO DXO RBBP6 RBBP6 CSTF1 CSTF1 WDR33 WDR33 CLP1-2 CLP1-2 FIP1L1 FIP1L1 SCAF4 SCAF4 CSTF2 CSTF2 F7BYE3_MONDO F7BYE3_MONDO CLP1 CLP1 CPSF7 CPSF7 CPSF4L CPSF4L RPRD2 RPRD2 XRN2 XRN2 PAPOLG PAPOLG CPSF6 CPSF6 CPSF2 CPSF2 ENSMODP00000048478 ENSMODP00000048478 ENSMODP00000049207 ENSMODP00000049207 ENSMODP00000049827 ENSMODP00000049827 ENSMODP00000051001 ENSMODP00000051001 ENSMODP00000051099 ENSMODP00000051099 SETX SETX ENSMODP00000057863 ENSMODP00000057863 SCAF8 SCAF8 SYMPK SYMPK UBE3D UBE3D RPRD1A RPRD1A CPSF3 CPSF3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPRD1BRegulation of nuclear pre-mRNA domain containing 1B. (359 aa)
CPSF4Cleavage and polyadenylation specific factor 4. (269 aa)
F7BCW9_MONDODWNN domain-containing protein. (118 aa)
ICE1Uncharacterized protein. (2351 aa)
PCF11PCF11 cleavage and polyadenylation factor subunit. (1695 aa)
F6V956_MONDODWNN domain-containing protein. (113 aa)
ZC3H6Zinc finger CCCH-type containing 6. (1189 aa)
SSU72Uncharacterized protein. (194 aa)
ZC3H4Zinc finger CCCH-type containing 4. (1212 aa)
CSTF3Suf domain-containing protein. (717 aa)
CPSF1Cleavage and polyadenylation specific factor 1. (1449 aa)
ICE2Interactor of little elongation complex ELL subunit 2. (982 aa)
WDR82WD_REPEATS_REGION domain-containing protein. (313 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (734 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
DXODecapping exoribonuclease. (399 aa)
RBBP6Uncharacterized protein. (1774 aa)
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
WDR33WD repeat domain 33. (1286 aa)
CLP1-2Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (433 aa)
FIP1L1Fip1 domain-containing protein. (583 aa)
SCAF4SR-related CTD associated factor 4. (1081 aa)
CSTF2Cleavage stimulation factor subunit 2. (571 aa)
F7BYE3_MONDOUncharacterized protein. (195 aa)
CLP1Cleavage and polyadenylation factor I subunit 1. (425 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (507 aa)
CPSF4LUncharacterized protein. (166 aa)
RPRD2Regulation of nuclear pre-mRNA domain containing 2. (1485 aa)
XRN25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (975 aa)
PAPOLGPoly(A) polymerase gamma. (752 aa)
CPSF6RRM domain-containing protein. (589 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (783 aa)
ENSMODP00000048478DWNN domain-containing protein. (109 aa)
ENSMODP00000049207RING-type domain-containing protein. (288 aa)
ENSMODP00000049827Uncharacterized protein. (174 aa)
ENSMODP00000051001Uncharacterized protein. (248 aa)
ENSMODP00000051099DWNN domain-containing protein. (158 aa)
SETXSenataxin. (2804 aa)
ENSMODP00000057863DWNN domain-containing protein. (153 aa)
SCAF8SR-related CTD associated factor 8. (1270 aa)
SYMPKSymplekin. (1313 aa)
UBE3DUbiquitin protein ligase E3D. (431 aa)
RPRD1ARegulation of nuclear pre-mRNA domain containing 1A. (312 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (694 aa)
Your Current Organism:
Monodelphis domestica
NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum
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