22 items (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQP9	Aquaporin 9; Belongs to the MIP/aquaporin (TC 1.A.8) family. (371 aa)
	SLCO1B1-2	Solute carrier organic anion transporter family member. (714 aa)
	SLCO1C1	Solute carrier organic anion transporter family member. (770 aa)
	LOC100011666	Solute carrier organic anion transporter family member. (702 aa)
	ABCD3	ATP binding cassette subfamily D member 3. (668 aa)
	SLC51B	Uncharacterized protein. (132 aa)
	SLC10A7	Sodium/bile acid cotransporter; Does not show transport activity towards bile acids or steroid sulfates; Belongs to the bile acid:sodium symporter (BASS) (TC 2.A.28) family. (349 aa)
	HNF1A	HNF1 homeobox A. (613 aa)
	ABCC2	ATP binding cassette subfamily C member 2. (1554 aa)
	FGF19	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (212 aa)
	SLC10A2	Solute carrier family 10 member 2. (348 aa)
	SLCO2B1	Solute carrier organic anion transporter family member. (700 aa)
	ABCB11	ATP binding cassette subfamily B member 11. (1322 aa)
	SLC10A1	Solute carrier family 10 member 1. (350 aa)
	NR0B2	Nuclear receptor subfamily 0 group B member 2. (293 aa)
	SLCO1A2	Solute carrier organic anion transporter family member. (663 aa)
	SLCO1B1	Solute carrier organic anion transporter family member. (647 aa)
	SLC51A	Solute carrier family 51 alpha subunit. (340 aa)
	SLC10A4	Solute carrier family 10 member 4. (499 aa)
	SLC10A6	Solute carrier family 10 member 6. (369 aa)
	SLC10A5	Solute carrier family 10 member 5. (441 aa)
	SLC10A3	Solute carrier family 10 member 3. (463 aa)

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB11	ABCC2	ENSMODP00000009711	ENSMODP00000004154	ATP binding cassette subfamily B member 11.	ATP binding cassette subfamily C member 2.	0.430
ABCB11	FGF19	ENSMODP00000009711	ENSMODP00000005036	ATP binding cassette subfamily B member 11.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.410
ABCB11	LOC100011666	ENSMODP00000009711	ENSMODP00000058336	ATP binding cassette subfamily B member 11.	Solute carrier organic anion transporter family member.	0.452
ABCB11	NR0B2	ENSMODP00000009711	ENSMODP00000018027	ATP binding cassette subfamily B member 11.	Nuclear receptor subfamily 0 group B member 2.	0.648
ABCB11	SLC10A1	ENSMODP00000009711	ENSMODP00000014214	ATP binding cassette subfamily B member 11.	Solute carrier family 10 member 1.	0.766
ABCB11	SLC10A2	ENSMODP00000009711	ENSMODP00000007186	ATP binding cassette subfamily B member 11.	Solute carrier family 10 member 2.	0.548
ABCB11	SLC51A	ENSMODP00000009711	ENSMODP00000022983	ATP binding cassette subfamily B member 11.	Solute carrier family 51 alpha subunit.	0.502
ABCB11	SLC51B	ENSMODP00000009711	ENSMODP00000055891	ATP binding cassette subfamily B member 11.	Uncharacterized protein.	0.493
ABCB11	SLCO1A2	ENSMODP00000009711	ENSMODP00000022219	ATP binding cassette subfamily B member 11.	Solute carrier organic anion transporter family member.	0.428
ABCB11	SLCO1B1	ENSMODP00000009711	ENSMODP00000022236	ATP binding cassette subfamily B member 11.	Solute carrier organic anion transporter family member.	0.452
ABCB11	SLCO1B1-2	ENSMODP00000009711	ENSMODP00000049937	ATP binding cassette subfamily B member 11.	Solute carrier organic anion transporter family member.	0.452
ABCC2	ABCB11	ENSMODP00000004154	ENSMODP00000009711	ATP binding cassette subfamily C member 2.	ATP binding cassette subfamily B member 11.	0.430
ABCC2	SLC10A1	ENSMODP00000004154	ENSMODP00000014214	ATP binding cassette subfamily C member 2.	Solute carrier family 10 member 1.	0.498
ABCC2	SLC10A7	ENSMODP00000004154	ENSMODP00000000626	ATP binding cassette subfamily C member 2.	Sodium/bile acid cotransporter; Does not show transport activity towards bile acids or steroid sulfates; Belongs to the bile acid:sodium symporter (BASS) (TC 2.A.28) family.	0.410
ABCC2	SLC51A	ENSMODP00000004154	ENSMODP00000022983	ATP binding cassette subfamily C member 2.	Solute carrier family 51 alpha subunit.	0.406
FGF19	ABCB11	ENSMODP00000005036	ENSMODP00000009711	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	ATP binding cassette subfamily B member 11.	0.410
FGF19	NR0B2	ENSMODP00000005036	ENSMODP00000018027	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Nuclear receptor subfamily 0 group B member 2.	0.557
FGF19	SLC10A1	ENSMODP00000005036	ENSMODP00000014214	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Solute carrier family 10 member 1.	0.441
FGF19	SLC10A2	ENSMODP00000005036	ENSMODP00000007186	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Solute carrier family 10 member 2.	0.495
FGF19	SLC51A	ENSMODP00000005036	ENSMODP00000022983	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Solute carrier family 51 alpha subunit.	0.544