13 items (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APC2	APC_N_CC domain-containing protein. (1586 aa)
	SLC39A6	Solute carrier family 39 member 6. (720 aa)
	EPHA2	EPH receptor A2. (886 aa)
	ITGAV	Integrin subunit alpha V; Belongs to the integrin alpha chain family. (1058 aa)
	ITGB3	Integrin beta; Belongs to the integrin beta chain family. (784 aa)
	F6T9J4_MONDO	Uncharacterized protein. (191 aa)
	CDC42	Cell division cycle 42. (191 aa)
	F7CI75_MONDO	Uncharacterized protein. (223 aa)
	DPP4	Dipeptidyl peptidase 4; Belongs to the peptidase S9B family. (806 aa)
	NCKAP1	NCK associated protein 1. (1115 aa)
	PDXP	Pyridoxal phosphatase. (333 aa)
	ENSMODP00000048395	Link domain-containing protein. (346 aa)
	SYNE2	Spectrin repeat containing nuclear envelope protein 2. (6528 aa)

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSMODP00000048395	ENSMODP00000032375	ENSMODP00000048395	Cell division cycle 42.	Link domain-containing protein.	0.418
CDC42	EPHA2	ENSMODP00000032375	ENSMODP00000004043	Cell division cycle 42.	EPH receptor A2.	0.435
CDC42	F7CI75_MONDO	ENSMODP00000032375	ENSMODP00000032833	Cell division cycle 42.	Uncharacterized protein.	0.901
CDC42	NCKAP1	ENSMODP00000032375	ENSMODP00000041402	Cell division cycle 42.	NCK associated protein 1.	0.597
ENSMODP00000048395	CDC42	ENSMODP00000048395	ENSMODP00000032375	Link domain-containing protein.	Cell division cycle 42.	0.418
ENSMODP00000048395	F6T9J4_MONDO	ENSMODP00000048395	ENSMODP00000017781	Link domain-containing protein.	Uncharacterized protein.	0.418
ENSMODP00000048395	F7CI75_MONDO	ENSMODP00000048395	ENSMODP00000032833	Link domain-containing protein.	Uncharacterized protein.	0.418
ENSMODP00000048395	ITGAV	ENSMODP00000048395	ENSMODP00000013342	Link domain-containing protein.	Integrin subunit alpha V; Belongs to the integrin alpha chain family.	0.515
ENSMODP00000048395	ITGB3	ENSMODP00000048395	ENSMODP00000013615	Link domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.476
EPHA2	CDC42	ENSMODP00000004043	ENSMODP00000032375	EPH receptor A2.	Cell division cycle 42.	0.435
EPHA2	F6T9J4_MONDO	ENSMODP00000004043	ENSMODP00000017781	EPH receptor A2.	Uncharacterized protein.	0.435
EPHA2	F7CI75_MONDO	ENSMODP00000004043	ENSMODP00000032833	EPH receptor A2.	Uncharacterized protein.	0.435
F6T9J4_MONDO	ENSMODP00000048395	ENSMODP00000017781	ENSMODP00000048395	Uncharacterized protein.	Link domain-containing protein.	0.418
F6T9J4_MONDO	EPHA2	ENSMODP00000017781	ENSMODP00000004043	Uncharacterized protein.	EPH receptor A2.	0.435
F6T9J4_MONDO	NCKAP1	ENSMODP00000017781	ENSMODP00000041402	Uncharacterized protein.	NCK associated protein 1.	0.597
F7CI75_MONDO	CDC42	ENSMODP00000032833	ENSMODP00000032375	Uncharacterized protein.	Cell division cycle 42.	0.901
F7CI75_MONDO	ENSMODP00000048395	ENSMODP00000032833	ENSMODP00000048395	Uncharacterized protein.	Link domain-containing protein.	0.418
F7CI75_MONDO	EPHA2	ENSMODP00000032833	ENSMODP00000004043	Uncharacterized protein.	EPH receptor A2.	0.435
F7CI75_MONDO	NCKAP1	ENSMODP00000032833	ENSMODP00000041402	Uncharacterized protein.	NCK associated protein 1.	0.597
ITGAV	ENSMODP00000048395	ENSMODP00000013342	ENSMODP00000048395	Integrin subunit alpha V; Belongs to the integrin alpha chain family.	Link domain-containing protein.	0.515