6 items (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABCG8	ATP binding cassette subfamily G member 8. (671 aa)
	NR1H4	Nuclear receptor subfamily 1 group H member 4. (481 aa)
	VDR	Uncharacterized protein. (289 aa)
	GPBAR1	G protein-coupled bile acid receptor 1. (330 aa)
	SLC10A1	Solute carrier family 10 member 1. (350 aa)
	ABCG5	ATP binding cassette subfamily G member 5. (651 aa)

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCG5	ABCG8	ENSMODP00000000677	ENSMODP00000028394	ATP binding cassette subfamily G member 5.	ATP binding cassette subfamily G member 8.	0.999
ABCG5	NR1H4	ENSMODP00000000677	ENSMODP00000059402	ATP binding cassette subfamily G member 5.	Nuclear receptor subfamily 1 group H member 4.	0.596
ABCG5	SLC10A1	ENSMODP00000000677	ENSMODP00000014214	ATP binding cassette subfamily G member 5.	Solute carrier family 10 member 1.	0.563
ABCG8	ABCG5	ENSMODP00000028394	ENSMODP00000000677	ATP binding cassette subfamily G member 8.	ATP binding cassette subfamily G member 5.	0.999
ABCG8	NR1H4	ENSMODP00000028394	ENSMODP00000059402	ATP binding cassette subfamily G member 8.	Nuclear receptor subfamily 1 group H member 4.	0.553
ABCG8	SLC10A1	ENSMODP00000028394	ENSMODP00000014214	ATP binding cassette subfamily G member 8.	Solute carrier family 10 member 1.	0.523
GPBAR1	NR1H4	ENSMODP00000019332	ENSMODP00000059402	G protein-coupled bile acid receptor 1.	Nuclear receptor subfamily 1 group H member 4.	0.877
NR1H4	ABCG5	ENSMODP00000059402	ENSMODP00000000677	Nuclear receptor subfamily 1 group H member 4.	ATP binding cassette subfamily G member 5.	0.596
NR1H4	ABCG8	ENSMODP00000059402	ENSMODP00000028394	Nuclear receptor subfamily 1 group H member 4.	ATP binding cassette subfamily G member 8.	0.553
NR1H4	GPBAR1	ENSMODP00000059402	ENSMODP00000019332	Nuclear receptor subfamily 1 group H member 4.	G protein-coupled bile acid receptor 1.	0.877
NR1H4	SLC10A1	ENSMODP00000059402	ENSMODP00000014214	Nuclear receptor subfamily 1 group H member 4.	Solute carrier family 10 member 1.	0.591
SLC10A1	ABCG5	ENSMODP00000014214	ENSMODP00000000677	Solute carrier family 10 member 1.	ATP binding cassette subfamily G member 5.	0.563
SLC10A1	ABCG8	ENSMODP00000014214	ENSMODP00000028394	Solute carrier family 10 member 1.	ATP binding cassette subfamily G member 8.	0.523
SLC10A1	NR1H4	ENSMODP00000014214	ENSMODP00000059402	Solute carrier family 10 member 1.	Nuclear receptor subfamily 1 group H member 4.	0.591