(30 nodes) Alpha-tubulin binding network (Monodelphis domestica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EML4	EMAP like 4. (1025 aa)
	ENSMODP00000051909	Uncharacterized protein. (89 aa)
	ENSMODP00000051759	LisH domain-containing protein. (806 aa)
	BBS4	Bardet-Biedl syndrome 4. (621 aa)
	CAV3	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (242 aa)
	TTLL7	Tubulin tyrosine ligase like 7. (881 aa)
	PACRGL	Parkin coregulated like. (251 aa)
	ENSMODP00000042554	Uncharacterized protein. (110 aa)
	PACRG	Uncharacterized protein. (144 aa)
	FAM110A	Family with sequence similarity 110 member A. (341 aa)
	HSPH1	Heat shock protein family H (Hsp110) member 1. (861 aa)
	TRPV4	Transient receptor potential cation channel subfamily V member 4. (640 aa)
	EFHC2	EF-hand domain containing 2. (747 aa)
	EFHC1	EF-hand domain containing 1. (651 aa)
	WASHC1	WASH complex subunit 1. (467 aa)
	TRIM36	Tripartite motif containing 36. (725 aa)
	FAM110C	Uncharacterized protein. (406 aa)
	TBCB	Tubulin folding cofactor B. (246 aa)
	SETD2	SET domain containing 2, histone lysine methyltransferase. (2565 aa)
	TBCEL	Ubiquitin-like domain-containing protein. (424 aa)
	FNTA	Farnesyltransferase, CAAX box, alpha. (390 aa)
	FAM110B	Family with sequence similarity 110 member B. (371 aa)
	TBCE	Uncharacterized protein. (529 aa)
	DNAL1	Uncharacterized protein. (477 aa)
	MAP11	Microtubule associated protein 11. (568 aa)
	RACGAP1	Rac GTPase activating protein 1. (608 aa)
	B4GALT1	Uncharacterized protein. (384 aa)
	INO80	INO80 complex ATPase subunit. (1558 aa)
	ENSMODP00000059823	Uncharacterized protein. (95 aa)
	HDAC6	Histone deacetylase 6. (1106 aa)

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS4	ENSMODP00000051759	ENSMODP00000051495	ENSMODP00000051759	Bardet-Biedl syndrome 4.	LisH domain-containing protein.	0.472
EFHC1	EFHC2	ENSMODP00000023470	ENSMODP00000026369	EF-hand domain containing 1.	EF-hand domain containing 2.	0.777
EFHC1	ENSMODP00000042554	ENSMODP00000023470	ENSMODP00000042554	EF-hand domain containing 1.	Uncharacterized protein.	0.648
EFHC1	ENSMODP00000051909	ENSMODP00000023470	ENSMODP00000051909	EF-hand domain containing 1.	Uncharacterized protein.	0.627
EFHC1	ENSMODP00000059823	ENSMODP00000023470	ENSMODP00000059823	EF-hand domain containing 1.	Uncharacterized protein.	0.627
EFHC1	PACRG	ENSMODP00000023470	ENSMODP00000042381	EF-hand domain containing 1.	Uncharacterized protein.	0.733
EFHC1	PACRGL	ENSMODP00000023470	ENSMODP00000047912	EF-hand domain containing 1.	Parkin coregulated like.	0.627
EFHC2	EFHC1	ENSMODP00000026369	ENSMODP00000023470	EF-hand domain containing 2.	EF-hand domain containing 1.	0.777
EFHC2	ENSMODP00000042554	ENSMODP00000026369	ENSMODP00000042554	EF-hand domain containing 2.	Uncharacterized protein.	0.650
EFHC2	ENSMODP00000051909	ENSMODP00000026369	ENSMODP00000051909	EF-hand domain containing 2.	Uncharacterized protein.	0.628
EFHC2	ENSMODP00000059823	ENSMODP00000026369	ENSMODP00000059823	EF-hand domain containing 2.	Uncharacterized protein.	0.628
EFHC2	PACRG	ENSMODP00000026369	ENSMODP00000042381	EF-hand domain containing 2.	Uncharacterized protein.	0.735
EFHC2	PACRGL	ENSMODP00000026369	ENSMODP00000047912	EF-hand domain containing 2.	Parkin coregulated like.	0.628
ENSMODP00000042554	EFHC1	ENSMODP00000042554	ENSMODP00000023470	Uncharacterized protein.	EF-hand domain containing 1.	0.648
ENSMODP00000042554	EFHC2	ENSMODP00000042554	ENSMODP00000026369	Uncharacterized protein.	EF-hand domain containing 2.	0.650
ENSMODP00000042554	PACRG	ENSMODP00000042554	ENSMODP00000042381	Uncharacterized protein.	Uncharacterized protein.	0.917
ENSMODP00000051759	BBS4	ENSMODP00000051759	ENSMODP00000051495	LisH domain-containing protein.	Bardet-Biedl syndrome 4.	0.472
ENSMODP00000051909	EFHC1	ENSMODP00000051909	ENSMODP00000023470	Uncharacterized protein.	EF-hand domain containing 1.	0.627
ENSMODP00000051909	EFHC2	ENSMODP00000051909	ENSMODP00000026369	Uncharacterized protein.	EF-hand domain containing 2.	0.628
ENSMODP00000051909	PACRG	ENSMODP00000051909	ENSMODP00000042381	Uncharacterized protein.	Uncharacterized protein.	0.460