STRINGSTRING
PRPF8 PRPF8 TXNL4B TXNL4B PRPF4 PRPF4 LSM7 LSM7 SNRPF SNRPF SNRNP200 SNRNP200 DDX23 DDX23 SNRNP27 SNRNP27 RBM42 RBM42 LSM4 LSM4 LSM2 LSM2 USP39 USP39 SNU13 SNU13 PRPF18 PRPF18 PRPF6 PRPF6 SNRNP40 SNRNP40 SNRPD1 SNRPD1 SNRPD2 SNRPD2 C19orf54 C19orf54 EFTUD2 EFTUD2 F6ZCD8_MONDO F6ZCD8_MONDO SNRPE SNRPE PRPF31 PRPF31 PRPF3 PRPF3 LSM3 LSM3 LSM5 LSM5 LSM8 LSM8 LSM6 LSM6 ENSMODP00000047516 ENSMODP00000047516 LOC100021269 LOC100021269 SNRPB SNRPB ENSMODP00000049274 ENSMODP00000049274 LOC100021236 LOC100021236 TXNL4A TXNL4A SNRPD3 SNRPD3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRPF8Pre-mRNA processing factor 8. (2317 aa)
TXNL4BThioredoxin like 4B. (186 aa)
PRPF4Pre-mRNA processing factor 4. (523 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (86 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)
DDX23DEAD-box helicase 23. (818 aa)
SNRNP27SNRNP27 domain-containing protein. (155 aa)
RBM42RNA binding motif protein 42. (472 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
USP39Ubiquitin specific peptidase 39. (572 aa)
SNU13Ribosomal_L7Ae domain-containing protein. (317 aa)
PRPF18SFM domain-containing protein. (351 aa)
PRPF6Pre-mRNA processing factor 6. (808 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (361 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (108 aa)
C19orf54Chromosome 19 open reading frame 54. (297 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (972 aa)
F6ZCD8_MONDOSFM domain-containing protein. (342 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
PRPF31Pre-mRNA processing factor 31. (499 aa)
PRPF3Pre-mRNA processing factor 3. (683 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (122 aa)
LSM6Sm domain-containing protein. (165 aa)
ENSMODP00000047516Uncharacterized protein. (53 aa)
LOC100021269U1-type domain-containing protein. (199 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein B; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes (By similarity). Is also a component of the minor U12 spliceosome (By similarity). As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing (By similarity). (273 aa)
ENSMODP00000049274Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (52 aa)
LOC100021236U1-type domain-containing protein. (199 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
Your Current Organism:
Monodelphis domestica
NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum
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