23 items (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCL25	SCY domain-containing protein. (138 aa)
	CNIH4	Uncharacterized protein. (220 aa)
	CCL27	SCY domain-containing protein. (128 aa)
	CXCL13	SCY domain-containing protein. (111 aa)
	ENSMODP00000050260	C-C motif chemokine. (121 aa)
	LOC100021456	C-C motif chemokine. (204 aa)
	NARS1	Asparaginyl-tRNA synthetase. (567 aa)
	CCL22	SCY domain-containing protein. (80 aa)
	ENSMODP00000043366	Uncharacterized protein. (68 aa)
	ENSMODP00000042114	SCY domain-containing protein. (97 aa)
	LOC103096620	SCY domain-containing protein. (103 aa)
	CCL20	C-C motif chemokine. (102 aa)
	LOC100017328	C-C motif chemokine. (95 aa)
	LOC100017283	C-C motif chemokine. (91 aa)
	CCL19	C-C motif chemokine. (96 aa)
	CCL5	C-C motif chemokine ligand 5. (91 aa)
	F7FVH6_MONDO	IF rod domain-containing protein; Belongs to the intermediate filament family. (1603 aa)
	CX3CL1	SCY domain-containing protein. (409 aa)
	CCRL2	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (338 aa)
	CCL21	C-C motif chemokine ligand 21. (138 aa)
	MSMP	Beta-microseminoprotein. (138 aa)
	LOC100018887	SCY domain-containing protein. (120 aa)
	JAK1	Protein kinase domain-containing protein. (199 aa)

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCL19	CCL20	ENSMODP00000038285	ENSMODP00000039409	C-C motif chemokine.	C-C motif chemokine.	0.519
CCL19	CCL21	ENSMODP00000038285	ENSMODP00000009776	C-C motif chemokine.	C-C motif chemokine ligand 21.	0.964
CCL19	CCL25	ENSMODP00000038285	ENSMODP00000039188	C-C motif chemokine.	SCY domain-containing protein.	0.770
CCL19	CCL27	ENSMODP00000038285	ENSMODP00000052809	C-C motif chemokine.	SCY domain-containing protein.	0.557
CCL19	CCL5	ENSMODP00000038285	ENSMODP00000023864	C-C motif chemokine.	C-C motif chemokine ligand 5.	0.545
CCL19	CCRL2	ENSMODP00000038285	ENSMODP00000014332	C-C motif chemokine.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.876
CCL19	CX3CL1	ENSMODP00000038285	ENSMODP00000016912	C-C motif chemokine.	SCY domain-containing protein.	0.555
CCL19	CXCL13	ENSMODP00000038285	ENSMODP00000050286	C-C motif chemokine.	SCY domain-containing protein.	0.594
CCL19	LOC100017283	ENSMODP00000038285	ENSMODP00000038527	C-C motif chemokine.	C-C motif chemokine.	0.543
CCL19	LOC100017328	ENSMODP00000038285	ENSMODP00000038528	C-C motif chemokine.	C-C motif chemokine.	0.486
CCL20	CCL19	ENSMODP00000039409	ENSMODP00000038285	C-C motif chemokine.	C-C motif chemokine.	0.519
CCL20	CCL21	ENSMODP00000039409	ENSMODP00000009776	C-C motif chemokine.	C-C motif chemokine ligand 21.	0.438
CCL20	CCL22	ENSMODP00000039409	ENSMODP00000043576	C-C motif chemokine.	SCY domain-containing protein.	0.444
CCL20	CCL25	ENSMODP00000039409	ENSMODP00000039188	C-C motif chemokine.	SCY domain-containing protein.	0.551
CCL20	CCL27	ENSMODP00000039409	ENSMODP00000052809	C-C motif chemokine.	SCY domain-containing protein.	0.502
CCL20	CCL5	ENSMODP00000039409	ENSMODP00000023864	C-C motif chemokine.	C-C motif chemokine ligand 5.	0.713
CCL20	CX3CL1	ENSMODP00000039409	ENSMODP00000016912	C-C motif chemokine.	SCY domain-containing protein.	0.567
CCL20	CXCL13	ENSMODP00000039409	ENSMODP00000050286	C-C motif chemokine.	SCY domain-containing protein.	0.467
CCL20	ENSMODP00000042114	ENSMODP00000039409	ENSMODP00000042114	C-C motif chemokine.	SCY domain-containing protein.	0.454
CCL20	ENSMODP00000050260	ENSMODP00000039409	ENSMODP00000050260	C-C motif chemokine.	C-C motif chemokine.	0.510