23 items (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RHOF	Uncharacterized protein. (111 aa)
	RHOA	Uncharacterized protein. (193 aa)
	RHOC	Uncharacterized protein. (225 aa)
	RAC1	Rac family small GTPase 1. (269 aa)
	RHOV	Ras homolog family member V. (272 aa)
	RHOBTB1	Uncharacterized protein. (221 aa)
	F6WTQ2_MONDO	Uncharacterized protein. (160 aa)
	RND3	Rho family GTPase 3. (244 aa)
	F6Y1T6_MONDO	Uncharacterized protein. (147 aa)
	F7CI75_MONDO	Uncharacterized protein. (223 aa)
	RHOG	Ras homolog family member G. (191 aa)
	RAC3	Rac family small GTPase 3. (192 aa)
	RHOQ	Ras homolog family member Q. (205 aa)
	RAC2	Rac family small GTPase 2. (281 aa)
	CDC42	Cell division cycle 42. (191 aa)
	RHOT1	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (707 aa)
	RHOBTB2	Rho related BTB domain containing 2. (752 aa)
	RHOT2	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (622 aa)
	RND2	Rho family GTPase 2. (231 aa)
	F6T9J4_MONDO	Uncharacterized protein. (191 aa)
	RHOJ	Ras homolog family member J. (214 aa)
	RHOU	Ras homolog family member U. (268 aa)
	RHOD	Uncharacterized protein. (235 aa)

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	F6WTQ2_MONDO	ENSMODP00000032375	ENSMODP00000036133	Cell division cycle 42.	Uncharacterized protein.	0.453
CDC42	F6Y1T6_MONDO	ENSMODP00000032375	ENSMODP00000033033	Cell division cycle 42.	Uncharacterized protein.	0.454
CDC42	F7CI75_MONDO	ENSMODP00000032375	ENSMODP00000032833	Cell division cycle 42.	Uncharacterized protein.	0.901
CDC42	RAC1	ENSMODP00000032375	ENSMODP00000055027	Cell division cycle 42.	Rac family small GTPase 1.	0.502
CDC42	RAC2	ENSMODP00000032375	ENSMODP00000000757	Cell division cycle 42.	Rac family small GTPase 2.	0.504
CDC42	RAC3	ENSMODP00000032375	ENSMODP00000003950	Cell division cycle 42.	Rac family small GTPase 3.	0.500
CDC42	RHOA	ENSMODP00000032375	ENSMODP00000057386	Cell division cycle 42.	Uncharacterized protein.	0.942
CDC42	RHOC	ENSMODP00000032375	ENSMODP00000057317	Cell division cycle 42.	Uncharacterized protein.	0.453
CDC42	RHOF	ENSMODP00000032375	ENSMODP00000015173	Cell division cycle 42.	Uncharacterized protein.	0.437
CDC42	RHOG	ENSMODP00000032375	ENSMODP00000032518	Cell division cycle 42.	Ras homolog family member G.	0.468
CDC42	RND3	ENSMODP00000032375	ENSMODP00000036064	Cell division cycle 42.	Rho family GTPase 3.	0.424
F6T9J4_MONDO	F6WTQ2_MONDO	ENSMODP00000017781	ENSMODP00000036133	Uncharacterized protein.	Uncharacterized protein.	0.454
F6T9J4_MONDO	F6Y1T6_MONDO	ENSMODP00000017781	ENSMODP00000033033	Uncharacterized protein.	Uncharacterized protein.	0.455
F6T9J4_MONDO	RAC1	ENSMODP00000017781	ENSMODP00000055027	Uncharacterized protein.	Rac family small GTPase 1.	0.503
F6T9J4_MONDO	RAC2	ENSMODP00000017781	ENSMODP00000000757	Uncharacterized protein.	Rac family small GTPase 2.	0.502
F6T9J4_MONDO	RAC3	ENSMODP00000017781	ENSMODP00000003950	Uncharacterized protein.	Rac family small GTPase 3.	0.501
F6T9J4_MONDO	RHOA	ENSMODP00000017781	ENSMODP00000057386	Uncharacterized protein.	Uncharacterized protein.	0.455
F6T9J4_MONDO	RHOC	ENSMODP00000017781	ENSMODP00000057317	Uncharacterized protein.	Uncharacterized protein.	0.455
F6T9J4_MONDO	RHOF	ENSMODP00000017781	ENSMODP00000015173	Uncharacterized protein.	Uncharacterized protein.	0.444
F6T9J4_MONDO	RHOG	ENSMODP00000017781	ENSMODP00000032518	Uncharacterized protein.	Ras homolog family member G.	0.469