30 items (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEMA3F	Semaphorin 3F; Belongs to the semaphorin family. (726 aa)
	PLXNB1	Plexin B1. (2191 aa)
	SEMA6D	Semaphorin 6D; Belongs to the semaphorin family. (1066 aa)
	MET	MET proto-oncogene, receptor tyrosine kinase. (1387 aa)
	SEMA4A	Semaphorin 4A; Belongs to the semaphorin family. (790 aa)
	SEMA3E	Semaphorin 3E; Belongs to the semaphorin family. (715 aa)
	SEMA3C	Semaphorin 3C; Belongs to the semaphorin family. (753 aa)
	SEMA6C	Semaphorin 6C; Belongs to the semaphorin family. (973 aa)
	SEMA4B	Semaphorin 4B; Belongs to the semaphorin family. (818 aa)
	SEMA4C	Uncharacterized protein; Belongs to the semaphorin family. (832 aa)
	SEMA3A	Semaphorin 3A; Belongs to the semaphorin family. (772 aa)
	PLXNA2	Plexin A2. (1875 aa)
	SEMA5B	Semaphorin 5B. (1092 aa)
	SEMA7A	Semaphorin 7A (John Milton Hagen blood group); Belongs to the semaphorin family. (675 aa)
	SEMA6A	Semaphorin 6A; Belongs to the semaphorin family. (1045 aa)
	SEMA4D	Semaphorin 4D; Belongs to the semaphorin family. (737 aa)
	PLXND1	Plexin D1. (1911 aa)
	SEMA5A	Semaphorin 5A. (1083 aa)
	PLXNB2	Sema domain-containing protein. (602 aa)
	PLXNA3	Plexin A3. (1859 aa)
	PLXNB3	Plexin B3. (1937 aa)
	ENSMODP00000056005	Sema domain-containing protein. (996 aa)
	PLXNA1	Plexin A1. (1598 aa)
	LOC103099055	Uncharacterized protein; Belongs to the semaphorin family. (776 aa)
	SEMA3D	Semaphorin 3D; Belongs to the semaphorin family. (778 aa)
	SEMA4F	Ssemaphorin 4F; Belongs to the semaphorin family. (795 aa)
	SEMA3G	Semaphorin 3G; Belongs to the semaphorin family. (760 aa)
	PLXNC1	Plexin C1. (1582 aa)
	SEMA4G	Semaphorin 4G; Belongs to the semaphorin family. (840 aa)
	SEMA3B	Semaphorin 3B; Belongs to the semaphorin family. (764 aa)

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMODP00000056005	LOC103099055	ENSMODP00000056005	ENSMODP00000059085	Sema domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.627
ENSMODP00000056005	MET	ENSMODP00000056005	ENSMODP00000019742	Sema domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.709
ENSMODP00000056005	PLXNB1	ENSMODP00000056005	ENSMODP00000017977	Sema domain-containing protein.	Plexin B1.	0.500
ENSMODP00000056005	PLXNB2	ENSMODP00000056005	ENSMODP00000050561	Sema domain-containing protein.	Sema domain-containing protein.	0.476
ENSMODP00000056005	PLXNB3	ENSMODP00000056005	ENSMODP00000054771	Sema domain-containing protein.	Plexin B3.	0.500
ENSMODP00000056005	SEMA3A	ENSMODP00000056005	ENSMODP00000034921	Sema domain-containing protein.	Semaphorin 3A; Belongs to the semaphorin family.	0.601
ENSMODP00000056005	SEMA3B	ENSMODP00000056005	ENSMODP00000015268	Sema domain-containing protein.	Semaphorin 3B; Belongs to the semaphorin family.	0.627
ENSMODP00000056005	SEMA3C	ENSMODP00000056005	ENSMODP00000021304	Sema domain-containing protein.	Semaphorin 3C; Belongs to the semaphorin family.	0.591
ENSMODP00000056005	SEMA3D	ENSMODP00000056005	ENSMODP00000059427	Sema domain-containing protein.	Semaphorin 3D; Belongs to the semaphorin family.	0.591
ENSMODP00000056005	SEMA3E	ENSMODP00000056005	ENSMODP00000021197	Sema domain-containing protein.	Semaphorin 3E; Belongs to the semaphorin family.	0.591
ENSMODP00000056005	SEMA3F	ENSMODP00000056005	ENSMODP00000015378	Sema domain-containing protein.	Semaphorin 3F; Belongs to the semaphorin family.	0.605
ENSMODP00000056005	SEMA3G	ENSMODP00000056005	ENSMODP00000014345	Sema domain-containing protein.	Semaphorin 3G; Belongs to the semaphorin family.	0.591
ENSMODP00000056005	SEMA4A	ENSMODP00000056005	ENSMODP00000021119	Sema domain-containing protein.	Semaphorin 4A; Belongs to the semaphorin family.	0.591
ENSMODP00000056005	SEMA4B	ENSMODP00000056005	ENSMODP00000024345	Sema domain-containing protein.	Semaphorin 4B; Belongs to the semaphorin family.	0.591
ENSMODP00000056005	SEMA4C	ENSMODP00000056005	ENSMODP00000029033	Sema domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.591
ENSMODP00000056005	SEMA4D	ENSMODP00000056005	ENSMODP00000048924	Sema domain-containing protein.	Semaphorin 4D; Belongs to the semaphorin family.	0.627
ENSMODP00000056005	SEMA4F	ENSMODP00000056005	ENSMODP00000005763	Sema domain-containing protein.	Ssemaphorin 4F; Belongs to the semaphorin family.	0.663
ENSMODP00000056005	SEMA4G	ENSMODP00000056005	ENSMODP00000015026	Sema domain-containing protein.	Semaphorin 4G; Belongs to the semaphorin family.	0.591
ENSMODP00000056005	SEMA5A	ENSMODP00000056005	ENSMODP00000049248	Sema domain-containing protein.	Semaphorin 5A.	0.591
ENSMODP00000056005	SEMA5B	ENSMODP00000056005	ENSMODP00000036878	Sema domain-containing protein.	Semaphorin 5B.	0.591