STRINGSTRING
AFF1 AFF1 CDK7 CDK7 SSRP1 SSRP1 F7G7Q2_MONDO F7G7Q2_MONDO CTR9 CTR9 ERCC2 ERCC2 LOC100027785 LOC100027785 GTF2H3 GTF2H3 LOC100032661 LOC100032661 F6PQP3_MONDO F6PQP3_MONDO F6PQN5_MONDO F6PQN5_MONDO F6VDP4_MONDO F6VDP4_MONDO F6WNY8_MONDO F6WNY8_MONDO F6WP01_MONDO F6WP01_MONDO F6WNI1_MONDO F6WNI1_MONDO F6WNH5_MONDO F6WNH5_MONDO F6WNG8_MONDO F6WNG8_MONDO F6SB62_MONDO F6SB62_MONDO LOC100015833 LOC100015833 RTF1 RTF1 F6VUC1_MONDO F6VUC1_MONDO CCNT2 CCNT2 LOC100010571 LOC100010571 MLLT1 MLLT1 F6WG96_MONDO F6WG96_MONDO GTF2F1 GTF2F1 LEO1 LEO1 F6YD76_MONDO F6YD76_MONDO MLLT3 MLLT3 NELFA NELFA POLR2E POLR2E GTF2H1 GTF2H1 SUPT16H SUPT16H ELOC ELOC POLR2A POLR2A GTF2H5 GTF2H5 MNAT1 MNAT1 F7CPH0_MONDO F7CPH0_MONDO F7CPG0_MONDO F7CPG0_MONDO LOC100012206 LOC100012206 WDR61 WDR61 CTDP1 CTDP1 CDC73 CDC73 ELOA ELOA CCNK CCNK PAF1 PAF1 POLR2C POLR2C POLR2J POLR2J LOC100010993 LOC100010993 POLR2I POLR2I EAF1 EAF1 F7FIQ6_MONDO F7FIQ6_MONDO NELFE NELFE GTF2H4 GTF2H4 NCBP2 NCBP2 ELOB ELOB NELFCD NELFCD NELFB NELFB EAF2 EAF2 POLR2D POLR2D ERCC3 ERCC3 POLR2F POLR2F SUPT6H SUPT6H POLR2K POLR2K ENSMODP00000059578 ENSMODP00000059578 ENSMODP00000059568 ENSMODP00000059568 AFF4 AFF4 GTF2F2 GTF2F2 ENSMODP00000058852 ENSMODP00000058852 ELL ELL ENSMODP00000057641 ENSMODP00000057641 ENSMODP00000057623 ENSMODP00000057623 ENSMODP00000056929 ENSMODP00000056929 ENSMODP00000056448 ENSMODP00000056448 ENSMODP00000055602 ENSMODP00000055602 ENSMODP00000052137 ENSMODP00000052137 IWS1 IWS1 NCBP1 NCBP1 ENSMODP00000050031 ENSMODP00000050031 ENSMODP00000047607 ENSMODP00000047607 SUPT5H SUPT5H ENSMODP00000047510 ENSMODP00000047510 ENSMODP00000047085 ENSMODP00000047085 ENSMODP00000046196 ENSMODP00000046196 SUPT4H1 SUPT4H1 ENSMODP00000044533 ENSMODP00000044533 CCNH CCNH CCNT1 CCNT1 POLR2H POLR2H POLR2G POLR2G CDK9 CDK9 POLR2B POLR2B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AFF1AF4/FMR2 family member 1. (1215 aa)
CDK7Cyclin dependent kinase 7; Belongs to the protein kinase superfamily. (346 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (712 aa)
F7G7Q2_MONDOUncharacterized protein. (302 aa)
CTR9CTR9 homolog, Paf1/RNA polymerase II complex component. (1183 aa)
ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit. (760 aa)
LOC100027785Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
GTF2H3General transcription factor IIH subunit 3. (304 aa)
LOC100032661Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
F6PQP3_MONDONuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (155 aa)
F6PQN5_MONDONuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
F6VDP4_MONDOTranscription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (105 aa)
F6WNY8_MONDORPOL4c domain-containing protein. (142 aa)
F6WP01_MONDORPOL4c domain-containing protein. (142 aa)
F6WNI1_MONDORPOL4c domain-containing protein. (142 aa)
F6WNH5_MONDORPOL4c domain-containing protein. (142 aa)
F6WNG8_MONDORPOL4c domain-containing protein. (142 aa)
F6SB62_MONDOUbiquitin-like domain-containing protein. (100 aa)
LOC100015833General transcription factor IIH subunit. (403 aa)
RTF1RTF1 homolog, Paf1/RNA polymerase II complex component. (709 aa)
F6VUC1_MONDOUncharacterized protein. (301 aa)
CCNT2Uncharacterized protein; Belongs to the cyclin family. (731 aa)
LOC100010571General transcription factor IIH subunit. (395 aa)
MLLT1MLLT1 super elongation complex subunit. (556 aa)
F6WG96_MONDOTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (243 aa)
GTF2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (243 aa)
LEO1LEO1 homolog, Paf1/RNA polymerase II complex component. (668 aa)
F6YD76_MONDOUncharacterized protein. (527 aa)
MLLT3AHD domain-containing protein. (163 aa)
NELFANegative elongation factor complex member A. (541 aa)
POLR2ERNA polymerase II subunit E. (221 aa)
GTF2H1Uncharacterized protein. (548 aa)
SUPT16HSPT16 homolog, facilitates chromatin remodeling subunit. (1047 aa)
ELOCSkp1_POZ domain-containing protein; Belongs to the SKP1 family. (126 aa)
POLR2ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1970 aa)
GTF2H5General transcription factor IIH subunit 5. (71 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
F7CPH0_MONDOUncharacterized protein. (272 aa)
F7CPG0_MONDOUncharacterized protein. (263 aa)
LOC100012206Uncharacterized protein. (344 aa)
WDR61WD repeat domain 61. (305 aa)
CTDP1CTD phosphatase subunit 1. (1047 aa)
CDC73CDC73_N domain-containing protein. (371 aa)
ELOATFIIS N-terminal domain-containing protein. (775 aa)
CCNKCyclin K; Belongs to the cyclin family. (580 aa)
PAF1Uncharacterized protein. (551 aa)
POLR2CRNA polymerase II subunit C. (275 aa)
POLR2JRNA polymerase II subunit J. (117 aa)
LOC100010993Uncharacterized protein. (301 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
EAF1ELL associated factor 1. (259 aa)
F7FIQ6_MONDOTFIIF_beta_N domain-containing protein. (255 aa)
NELFENegative elongation factor complex member E. (400 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (477 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
ELOBUbiquitin-like domain-containing protein. (113 aa)
NELFCDNegative elongation factor complex member C/D. (592 aa)
NELFBNegative elongation factor complex member B. (580 aa)
EAF2ELL associated factor 2. (262 aa)
POLR2DRPOL4c domain-containing protein. (142 aa)
ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit. (783 aa)
POLR2FRNA polymerase II subunit F. (127 aa)
SUPT6HTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1726 aa)
POLR2KUncharacterized protein. (58 aa)
ENSMODP00000059578RPOL4c domain-containing protein. (104 aa)
ENSMODP00000059568annotation not available (142 aa)
AFF4AF4/FMR2 family member 4. (1198 aa)
GTF2F2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (255 aa)
ENSMODP00000058852Uncharacterized protein. (820 aa)
ELLElongation factor for RNA polymerase II. (629 aa)
ENSMODP00000057641annotation not available (142 aa)
ENSMODP00000057623annotation not available (142 aa)
ENSMODP00000056929CYCLIN domain-containing protein; Belongs to the cyclin family. (172 aa)
ENSMODP00000056448annotation not available (142 aa)
ENSMODP00000055602Uncharacterized protein. (451 aa)
ENSMODP00000052137Uncharacterized protein. (85 aa)
IWS1Interacts with SUPT6H, CTD assembly factor 1. (945 aa)
NCBP1Nuclear cap binding protein subunit 1. (794 aa)
ENSMODP00000050031Uncharacterized protein. (80 aa)
ENSMODP00000047607Uncharacterized protein. (60 aa)
SUPT5HTranscription elongation factor SPT5. (1041 aa)
ENSMODP00000047510Uncharacterized protein. (206 aa)
ENSMODP00000047085annotation not available (142 aa)
ENSMODP00000046196Uncharacterized protein. (84 aa)
SUPT4H1Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
ENSMODP00000044533BSD domain-containing protein. (232 aa)
CCNHCyclin H; Belongs to the cyclin family. (323 aa)
CCNT1Cyclin T1. (590 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
POLR2GRNA polymerase II subunit G. (172 aa)
CDK9Cyclin dependent kinase 9. (508 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
Your Current Organism:
Monodelphis domestica
NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum
Server load: low (24%) [HD]