70 items (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDCBP	Syndecan binding protein. (311 aa)
	CYCS	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (105 aa)
	LOC103101367	Uncharacterized protein. (211 aa)
	BIRC7	RING-type domain-containing protein. (420 aa)
	FADD	Uncharacterized protein. (193 aa)
	ENSMODP00000051602	CARD domain-containing protein. (94 aa)
	ENSMODP00000054112	CARD domain-containing protein. (104 aa)
	TNFSF10	Tumor necrosis factor ligand superfamily member. (301 aa)
	ENSMODP00000055864	RING-type domain-containing protein. (319 aa)
	OGT	O-linked N-acetylglucosamine (GlcNAc) transferase. (1055 aa)
	IRF2	Interferon regulatory factor 2. (411 aa)
	ENSMODP00000043518	CARD domain-containing protein. (110 aa)
	ENSMODP00000043793	Ubiquitin-like domain-containing protein. (104 aa)
	ENSMODP00000044759	Ubiquitin-like domain-containing protein. (75 aa)
	LOC100619355	Ubiquitin-like domain-containing protein. (77 aa)
	LOC103100274	Uncharacterized protein. (667 aa)
	LOC654275	Caspase-3-like protein 2; Belongs to the peptidase C14A family. (276 aa)
	CHMP6	Uncharacterized protein. (201 aa)
	ENSMODP00000047294	Ubiquitin-like domain-containing protein. (92 aa)
	LOC100032604	Uncharacterized protein; Belongs to the peptidase C14A family. (428 aa)
	BAX	Uncharacterized protein. (296 aa)
	CHMP3	Uncharacterized protein. (223 aa)
	LOC103102395	Uncharacterized protein. (207 aa)
	ENSMODP00000050889	CARD domain-containing protein. (507 aa)
	CHMP4B	Charged multivesicular body protein 4B. (269 aa)
	CDC37	Cell division cycle 37. (382 aa)
	F6Y4D4_MONDO	Uncharacterized protein. (180 aa)
	GSDME	Gasdermin E. (500 aa)
	RPS27A	Ubiquitin-like domain-containing protein. (156 aa)
	F7BW97_MONDO	BRO1 domain-containing protein. (854 aa)
	PELI1	E3 ubiquitin-protein ligase pellino homolog; E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. (418 aa)
	CHMP4A	Charged multivesicular body protein 4A. (221 aa)
	KXD1	KxDL domain-containing protein. (183 aa)
	UBA52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	CASP3	Caspase-3-like protein 1; Belongs to the peptidase C14A family. (276 aa)
	CHMP4C	Charged multivesicular body protein 4C. (232 aa)
	TRADD	TNFRSF1A associated via death domain. (361 aa)
	LOC100010741	CARD domain-containing protein. (585 aa)
	BIRC2	Uncharacterized protein. (383 aa)
	NPVF	Uncharacterized protein. (211 aa)
	RIPK1	Receptor interacting serine/threonine kinase 1. (706 aa)
	CHMP7	Charged multivesicular body protein 7. (453 aa)
	LOC103100524	Uncharacterized protein. (408 aa)
	HMGB1	Uncharacterized protein. (216 aa)
	GSDMD	Uncharacterized protein. (471 aa)
	TTC6	TPR_REGION domain-containing protein. (1862 aa)
	GSDMB	Uncharacterized protein. (434 aa)
	IL1B	Multifunctional fusion protein; Potent proinflammatory cytokine. Initially discovered as the major endogenous pyrogen, induces prostaglandin synthesis, neutrophil influx and activation, T-cell activation and cytokine production, B- cell activation and antibody production, and fibroblast proliferation and collagen production; Belongs to the IL-1 family. (272 aa)
	IL1A	Interleukin-1. (263 aa)
	IRF1	Interferon regulatory factor. (325 aa)
	BAK1	BCL2 antagonist/killer 1. (204 aa)
	XIAP	X-linked inhibitor of apoptosis. (498 aa)
	CFLAR	Uncharacterized protein. (266 aa)
	CASP8	Caspase 8; Belongs to the peptidase C14A family. (472 aa)
	FLOT1	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (420 aa)
	LOC100021198	Uncharacterized protein. (761 aa)
	STUB1	STIP1 homology and U-box containing protein 1. (313 aa)
	CHMP2B	Charged multivesicular body protein 2B. (214 aa)
	F7FV67_MONDO	Ubiquitin-like domain-containing protein. (156 aa)
	FLOT2	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (504 aa)
	F7G5T5_MONDO	Uncharacterized protein; Belongs to the peptidase C14A family. (284 aa)
	LOC100032592	Uncharacterized protein; Belongs to the peptidase C14A family. (375 aa)
	LOC100016987	Uncharacterized protein; Belongs to the peptidase C14A family. (472 aa)
	MDP1	Uncharacterized protein. (160 aa)
	PARK2	RBR-type E3 ubiquitin transferase. (74 aa)
	CASP18	Uncharacterized protein; Belongs to the peptidase C14A family. (471 aa)
	K7E453_MONDO	Uncharacterized protein; Belongs to the peptidase C14A family. (413 aa)
	LOC100026811	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (104 aa)
	ENSMODP00000041949	KxDL domain-containing protein. (169 aa)
	ENSMODP00000043309	CARD domain-containing protein. (102 aa)

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAK1	BAX	ENSMODP00000017616	ENSMODP00000048795	BCL2 antagonist/killer 1.	Uncharacterized protein.	0.981
BAK1	BIRC7	ENSMODP00000017616	ENSMODP00000058789	BCL2 antagonist/killer 1.	RING-type domain-containing protein.	0.423
BAK1	CYCS	ENSMODP00000017616	ENSMODP00000058499	BCL2 antagonist/killer 1.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.978
BAK1	LOC100026811	ENSMODP00000017616	ENSMODP00000041124	BCL2 antagonist/killer 1.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.967
BAK1	NPVF	ENSMODP00000017616	ENSMODP00000000730	BCL2 antagonist/killer 1.	Uncharacterized protein.	0.422
BAX	BAK1	ENSMODP00000048795	ENSMODP00000017616	Uncharacterized protein.	BCL2 antagonist/killer 1.	0.981
BAX	CASP3	ENSMODP00000048795	ENSMODP00000005560	Uncharacterized protein.	Caspase-3-like protein 1; Belongs to the peptidase C14A family.	0.451
BAX	CYCS	ENSMODP00000048795	ENSMODP00000058499	Uncharacterized protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.971
BAX	LOC100026811	ENSMODP00000048795	ENSMODP00000041124	Uncharacterized protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.960
BAX	LOC654275	ENSMODP00000048795	ENSMODP00000046868	Uncharacterized protein.	Caspase-3-like protein 2; Belongs to the peptidase C14A family.	0.451
BAX	NPVF	ENSMODP00000048795	ENSMODP00000000730	Uncharacterized protein.	Uncharacterized protein.	0.422
BAX	PARK2	ENSMODP00000048795	ENSMODP00000039734	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.915
BIRC2	CASP3	ENSMODP00000000728	ENSMODP00000005560	Uncharacterized protein.	Caspase-3-like protein 1; Belongs to the peptidase C14A family.	0.960
BIRC2	CFLAR	ENSMODP00000000728	ENSMODP00000018873	Uncharacterized protein.	Uncharacterized protein.	0.447
BIRC2	ENSMODP00000043793	ENSMODP00000000728	ENSMODP00000043793	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.548
BIRC2	ENSMODP00000047294	ENSMODP00000000728	ENSMODP00000047294	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.532
BIRC2	F7FV67_MONDO	ENSMODP00000000728	ENSMODP00000022067	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.548
BIRC2	FADD	ENSMODP00000000728	ENSMODP00000059564	Uncharacterized protein.	Uncharacterized protein.	0.939
BIRC2	LOC100010741	ENSMODP00000000728	ENSMODP00000000705	Uncharacterized protein.	CARD domain-containing protein.	0.901
BIRC2	LOC100021198	ENSMODP00000000728	ENSMODP00000020484	Uncharacterized protein.	Uncharacterized protein.	0.642