(9 nodes) Nuclear-transcribed mRNA catabolic process, 3-5 exonucleolytic nonsense-mediated decay network (Penicillium roqueforti)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6QCK2_PENRF	Ribosomal protein S5 domain 2-type fold. (387 aa)
	W6QDN9_PENRF	Helicase, superfamily 1/2, ATP-binding domain. (1299 aa)
	W6QFW4_PENRF	Up-frameshift suppressor 2. (1148 aa)
	W6QG42_PENRF	Ribosomal protein S5 domain 2-type fold. (383 aa)
	rrp45	Exosome complex component rrp45. (297 aa)
	rec14	Meiotic recombination protein rec14. (309 aa)
	W6Q629_PENRF	Genomic scaffold, ProqFM164S02. (249 aa)
	W6Q5L7_PENRF	N-terminal acetyltransferase A, auxiliary subunit. (1450 aa)
	W6QA19_PENRF	Ribosomal protein S5 domain 2-type fold. (265 aa)

Your Current Organism:

Penicillium roqueforti

NCBI taxonomy Id: 1365484
Other names: P. roqueforti FM164, Penicillium roqueforti FM164

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6Q5L7_PENRF	W6Q629_PENRF	W6Q5L7	W6Q629	N-terminal acetyltransferase A, auxiliary subunit.	Genomic scaffold, ProqFM164S02.	0.902
W6Q5L7_PENRF	W6QA19_PENRF	W6Q5L7	W6QA19	N-terminal acetyltransferase A, auxiliary subunit.	Ribosomal protein S5 domain 2-type fold.	0.889
W6Q5L7_PENRF	W6QCK2_PENRF	W6Q5L7	W6QCK2	N-terminal acetyltransferase A, auxiliary subunit.	Ribosomal protein S5 domain 2-type fold.	0.831
W6Q5L7_PENRF	W6QDN9_PENRF	W6Q5L7	W6QDN9	N-terminal acetyltransferase A, auxiliary subunit.	Helicase, superfamily 1/2, ATP-binding domain.	0.999
W6Q5L7_PENRF	W6QG42_PENRF	W6Q5L7	W6QG42	N-terminal acetyltransferase A, auxiliary subunit.	Ribosomal protein S5 domain 2-type fold.	0.881
W6Q5L7_PENRF	rec14	W6Q5L7	W6Q219	N-terminal acetyltransferase A, auxiliary subunit.	Meiotic recombination protein rec14.	0.999
W6Q5L7_PENRF	rrp45	W6Q5L7	W6PT72	N-terminal acetyltransferase A, auxiliary subunit.	Exosome complex component rrp45.	0.934
W6Q629_PENRF	W6Q5L7_PENRF	W6Q629	W6Q5L7	Genomic scaffold, ProqFM164S02.	N-terminal acetyltransferase A, auxiliary subunit.	0.902
W6Q629_PENRF	W6QA19_PENRF	W6Q629	W6QA19	Genomic scaffold, ProqFM164S02.	Ribosomal protein S5 domain 2-type fold.	0.999
W6Q629_PENRF	W6QCK2_PENRF	W6Q629	W6QCK2	Genomic scaffold, ProqFM164S02.	Ribosomal protein S5 domain 2-type fold.	0.999
W6Q629_PENRF	W6QDN9_PENRF	W6Q629	W6QDN9	Genomic scaffold, ProqFM164S02.	Helicase, superfamily 1/2, ATP-binding domain.	0.946
W6Q629_PENRF	W6QG42_PENRF	W6Q629	W6QG42	Genomic scaffold, ProqFM164S02.	Ribosomal protein S5 domain 2-type fold.	0.999
W6Q629_PENRF	rec14	W6Q629	W6Q219	Genomic scaffold, ProqFM164S02.	Meiotic recombination protein rec14.	0.841
W6Q629_PENRF	rrp45	W6Q629	W6PT72	Genomic scaffold, ProqFM164S02.	Exosome complex component rrp45.	0.999
W6QA19_PENRF	W6Q5L7_PENRF	W6QA19	W6Q5L7	Ribosomal protein S5 domain 2-type fold.	N-terminal acetyltransferase A, auxiliary subunit.	0.889
W6QA19_PENRF	W6Q629_PENRF	W6QA19	W6Q629	Ribosomal protein S5 domain 2-type fold.	Genomic scaffold, ProqFM164S02.	0.999
W6QA19_PENRF	W6QCK2_PENRF	W6QA19	W6QCK2	Ribosomal protein S5 domain 2-type fold.	Ribosomal protein S5 domain 2-type fold.	0.999
W6QA19_PENRF	W6QDN9_PENRF	W6QA19	W6QDN9	Ribosomal protein S5 domain 2-type fold.	Helicase, superfamily 1/2, ATP-binding domain.	0.942
W6QA19_PENRF	W6QG42_PENRF	W6QA19	W6QG42	Ribosomal protein S5 domain 2-type fold.	Ribosomal protein S5 domain 2-type fold.	0.998
W6QA19_PENRF	rec14	W6QA19	W6Q219	Ribosomal protein S5 domain 2-type fold.	Meiotic recombination protein rec14.	0.857