(22 nodes) ncRNA transcription network (Penicillium roqueforti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6PYU4_PENRF	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (241 aa)
	W6Q4E2_PENRF	B-block binding subunit of TFIIIC. (1890 aa)
	RPB10	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (74 aa)
	W6Q6X1_PENRF	Plus-3. (522 aa)
	rpb7	DNA-directed RNA polymerase II subunit rpb7. (169 aa)
	MOT1	TATA-binding protein-associated factor MOT1. (1908 aa)
	W6QCV6_PENRF	SWIB/MDM2 domain. (276 aa)
	W6QD58_PENRF	Transcription initiation factor Rrn11. (431 aa)
	ckb-1	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (367 aa)
	W6QG39_PENRF	Homeodomain-like. (645 aa)
	W6QKY4_PENRF	Histone H3; Belongs to the histone H3 family. (136 aa)
	rpc19	DNA-directed RNA polymerases I and III subunit RPAC2. (138 aa)
	RPC10	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (78 aa)
	rpc25	DNA-directed RNA polymerase III subunit rpc8. (193 aa)
	W6QQ72_PENRF	DNA polymerase V. (984 aa)
	W6QQN9_PENRF	SANT domain-containing protein. (861 aa)
	acr-2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1249 aa)
	cse-4	Histone H3-like centromeric protein cse-4. (174 aa)
	W6R1B0_PENRF	Homeodomain-like. (291 aa)
	W6R1W5_PENRF	RNA polymerase I associated factor, A49-like. (497 aa)
	W6Q0H3_PENRF	RNA polymerase I-specific transcription initiation factor RRN6-like. (983 aa)
	RPO26	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (153 aa)

Your Current Organism:

Penicillium roqueforti

NCBI taxonomy Id: 1365484
Other names: P. roqueforti FM164, Penicillium roqueforti FM164

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPB10	RPC10	W6Q4T1	W6QLH5	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
RPB10	RPO26	W6Q4T1	W6PWP6	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
RPB10	W6PYU4_PENRF	W6Q4T1	W6PYU4	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.961
RPB10	W6Q0H3_PENRF	W6Q4T1	W6Q0H3	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	RNA polymerase I-specific transcription initiation factor RRN6-like.	0.650
RPB10	W6Q4E2_PENRF	W6Q4T1	W6Q4E2	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	B-block binding subunit of TFIIIC.	0.494
RPB10	W6Q6X1_PENRF	W6Q4T1	W6Q6X1	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	Plus-3.	0.926
RPB10	W6QD58_PENRF	W6Q4T1	W6QD58	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	Transcription initiation factor Rrn11.	0.731
RPB10	W6QKY4_PENRF	W6Q4T1	W6QKY4	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	Histone H3; Belongs to the histone H3 family.	0.934
RPB10	W6QQ72_PENRF	W6Q4T1	W6QQ72	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA polymerase V.	0.661
RPB10	W6R1W5_PENRF	W6Q4T1	W6R1W5	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	RNA polymerase I associated factor, A49-like.	0.999
RPB10	acr-2	W6Q4T1	W6QQR7	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
RPB10	cse-4	W6Q4T1	W6QTP5	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	Histone H3-like centromeric protein cse-4.	0.934
RPB10	rpb7	W6Q4T1	W6Q8K9	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase II subunit rpb7.	0.999
RPB10	rpc19	W6Q4T1	W6QL05	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.999
RPB10	rpc25	W6Q4T1	W6QMQ2	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase III subunit rpc8.	0.997
RPC10	RPB10	W6QLH5	W6Q4T1	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.999
RPC10	RPO26	W6QLH5	W6PWP6	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
RPC10	W6PYU4_PENRF	W6QLH5	W6PYU4	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.958
RPC10	W6Q0H3_PENRF	W6QLH5	W6Q0H3	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	RNA polymerase I-specific transcription initiation factor RRN6-like.	0.643
RPC10	W6Q4E2_PENRF	W6QLH5	W6Q4E2	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	B-block binding subunit of TFIIIC.	0.614