27 items (Kalmanozyma brasiliensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V5EPX8_KALBG	RNA helicase. (1500 aa)
	V5EPL4_KALBG	BP28CT domain-containing protein. (2216 aa)
	V5EQH7_KALBG	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (398 aa)
	V5EL79_KALBG	CBF domain-containing protein. (1171 aa)
	V5EKX6_KALBG	Uncharacterized protein. (362 aa)
	V5ECD6_KALBG	RNA 3'-terminal phosphate cyclase. (411 aa)
	V5EB29_KALBG	U3 small nucleolar ribonucleoprotein. (288 aa)
	V5E6F1_KALBG	CBF domain-containing protein. (845 aa)
	V5F305_KALBG	Uncharacterized protein. (1053 aa)
	V5GFV1_KALBG	U3 small nucleolar RNA-associated protein 22. (1240 aa)
	V5GJI4_KALBG	Uncharacterized protein. (983 aa)
	V5GJT6_KALBG	Protein kinase; Belongs to the protein kinase superfamily. (342 aa)
	V5GJW1_KALBG	Uncharacterized protein. (1064 aa)
	V5GJY0_KALBG	Uncharacterized protein. (673 aa)
	V5GK11_KALBG	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (306 aa)
	V5GNY7_KALBG	BUD22 domain-containing protein. (577 aa)
	V5GQD9_KALBG	GTP-binding protein AARP2 involved in 40S ribosome biogenesis. (1161 aa)
	V5F125_KALBG	Uncharacterized protein. (1103 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (929 aa)
	V5EZ48_KALBG	Uncharacterized protein. (950 aa)
	V5EV43_KALBG	Kri1_C domain-containing protein. (714 aa)
	V5EV40_KALBG	Putative U3 snoRNP protein Utp20p. (3092 aa)
	V5ETI3_KALBG	WD_REPEATS_REGION domain-containing protein. (1117 aa)
	V5ETH0_KALBG	Uncharacterized protein. (974 aa)
	V5ESC7_KALBG	Putative IMP3-component of the U3 small nucleolar ribonucleoprotein. (182 aa)
	V5ERJ6_KALBG	Putative periodic tryptophan protein PWP2. (902 aa)
	V5F2V9_KALBG	Uncharacterized protein. (464 aa)

Your Current Organism:

Kalmanozyma brasiliensis

NCBI taxonomy Id: 1365824
Other names: K. brasiliensis GHG001, Kalmanozyma brasiliensis GHG001, Pseudozyma brasiliensis GHG001, Pseudozyma hubeiensis GHG001

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	V5E6F1_KALBG	V5EZD8	V5E6F1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CBF domain-containing protein.	0.846
ERB1	V5EB29_KALBG	V5EZD8	V5EB29	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar ribonucleoprotein.	0.821
ERB1	V5ECD6_KALBG	V5EZD8	V5ECD6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA 3'-terminal phosphate cyclase.	0.641
ERB1	V5EKX6_KALBG	V5EZD8	V5EKX6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.507
ERB1	V5EL79_KALBG	V5EZD8	V5EL79	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CBF domain-containing protein.	0.939
ERB1	V5EPL4_KALBG	V5EZD8	V5EPL4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	BP28CT domain-containing protein.	0.930
ERB1	V5EPX8_KALBG	V5EZD8	V5EPX8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA helicase.	0.960
ERB1	V5ERJ6_KALBG	V5EZD8	V5ERJ6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Putative periodic tryptophan protein PWP2.	0.916
ERB1	V5ESC7_KALBG	V5EZD8	V5ESC7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Putative IMP3-component of the U3 small nucleolar ribonucleoprotein.	0.570
ERB1	V5ETH0_KALBG	V5EZD8	V5ETH0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.639
ERB1	V5ETI3_KALBG	V5EZD8	V5ETI3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.920
ERB1	V5EV40_KALBG	V5EZD8	V5EV40	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Putative U3 snoRNP protein Utp20p.	0.663
ERB1	V5EV43_KALBG	V5EZD8	V5EV43	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Kri1_C domain-containing protein.	0.476
ERB1	V5EZ48_KALBG	V5EZD8	V5EZ48	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.810
ERB1	V5F125_KALBG	V5EZD8	V5F125	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.918
ERB1	V5F305_KALBG	V5EZD8	V5F305	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.725
ERB1	V5GFV1_KALBG	V5EZD8	V5GFV1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein 22.	0.875
ERB1	V5GJI4_KALBG	V5EZD8	V5GJI4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.879
ERB1	V5GJW1_KALBG	V5EZD8	V5GJW1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.933
ERB1	V5GJY0_KALBG	V5EZD8	V5GJY0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.948