23 items (Kalmanozyma brasiliensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	V5EW09_KALBG	Histone H2A; Belongs to the histone H2A family. (136 aa)
	V5GQ30_KALBG	TATA binding protein. (693 aa)
	V5GHI3_KALBG	Histone H3; Belongs to the histone H3 family. (136 aa)
	V5GGH7_KALBG	Nuclear transcription factor. (144 aa)
	V5GEN7_KALBG	Histone H3; Belongs to the histone H3 family. (136 aa)
	V5F3M5_KALBG	Class 2 transcription repressor NC2, alpha subunit. (120 aa)
	V5F286_KALBG	Uncharacterized protein. (291 aa)
	V5EXZ4_KALBG	Histone H2B; Belongs to the histone H2B family. (142 aa)
	V5EXE4_KALBG	Putative histone 3. (187 aa)
	V5EWU2_KALBG	Histone H2A; Belongs to the histone H2A family. (135 aa)
	V5EWT0_KALBG	CBFD_NFYB_HMF domain-containing protein. (200 aa)
	V5EW42_KALBG	Uncharacterized protein. (403 aa)
	V5E8Y4_KALBG	TAF4 domain-containing protein. (439 aa)
	V5E9G9_KALBG	Uncharacterized protein. (562 aa)
	V5ED91_KALBG	CBFD_NFYB_HMF domain-containing protein. (220 aa)
	KAE1	tRNA N6-adenosine threonylcarbamoyltransferase; Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. KAE1 likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity. The EKC/KEOPS complex also promotes both telomere uncapping and telomere elongation. Th [...] (1649 aa)
	V5EMT3_KALBG	Uncharacterized protein. (294 aa)
	V5EPF4_KALBG	Uncharacterized protein. (251 aa)
	V5EPZ2_KALBG	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (381 aa)
	V5ERA3_KALBG	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	V5ERX6_KALBG	TAFII28 domain-containing protein. (427 aa)
	V5ESQ3_KALBG	CBFD_NFYB_HMF domain-containing protein. (208 aa)
	V5EVC4_KALBG	Bromo domain-containing protein. (757 aa)

Your Current Organism:

Kalmanozyma brasiliensis

NCBI taxonomy Id: 1365824
Other names: K. brasiliensis GHG001, Kalmanozyma brasiliensis GHG001, Pseudozyma brasiliensis GHG001, Pseudozyma hubeiensis GHG001

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V5E8Y4_KALBG	V5E9G9_KALBG	V5E8Y4	V5E9G9	TAF4 domain-containing protein.	Uncharacterized protein.	0.944
V5E8Y4_KALBG	V5EMT3_KALBG	V5E8Y4	V5EMT3	TAF4 domain-containing protein.	Uncharacterized protein.	0.997
V5E8Y4_KALBG	V5EPF4_KALBG	V5E8Y4	V5EPF4	TAF4 domain-containing protein.	Uncharacterized protein.	0.997
V5E8Y4_KALBG	V5ERX6_KALBG	V5E8Y4	V5ERX6	TAF4 domain-containing protein.	TAFII28 domain-containing protein.	0.998
V5E8Y4_KALBG	V5EWU2_KALBG	V5E8Y4	V5EWU2	TAF4 domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.485
V5E8Y4_KALBG	V5GQ30_KALBG	V5E8Y4	V5GQ30	TAF4 domain-containing protein.	TATA binding protein.	0.998
V5E9G9_KALBG	V5E8Y4_KALBG	V5E9G9	V5E8Y4	Uncharacterized protein.	TAF4 domain-containing protein.	0.944
V5E9G9_KALBG	V5EMT3_KALBG	V5E9G9	V5EMT3	Uncharacterized protein.	Uncharacterized protein.	0.925
V5E9G9_KALBG	V5EPF4_KALBG	V5E9G9	V5EPF4	Uncharacterized protein.	Uncharacterized protein.	0.871
V5E9G9_KALBG	V5ERX6_KALBG	V5E9G9	V5ERX6	Uncharacterized protein.	TAFII28 domain-containing protein.	0.958
V5E9G9_KALBG	V5GQ30_KALBG	V5E9G9	V5GQ30	Uncharacterized protein.	TATA binding protein.	0.952
V5ED91_KALBG	V5ESQ3_KALBG	V5ED91	V5ESQ3	CBFD_NFYB_HMF domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.968
V5ED91_KALBG	V5GGH7_KALBG	V5ED91	V5GGH7	CBFD_NFYB_HMF domain-containing protein.	Nuclear transcription factor.	0.409
V5EMT3_KALBG	V5E8Y4_KALBG	V5EMT3	V5E8Y4	Uncharacterized protein.	TAF4 domain-containing protein.	0.997
V5EMT3_KALBG	V5E9G9_KALBG	V5EMT3	V5E9G9	Uncharacterized protein.	Uncharacterized protein.	0.925
V5EMT3_KALBG	V5EPF4_KALBG	V5EMT3	V5EPF4	Uncharacterized protein.	Uncharacterized protein.	0.997
V5EMT3_KALBG	V5ERX6_KALBG	V5EMT3	V5ERX6	Uncharacterized protein.	TAFII28 domain-containing protein.	0.997
V5EMT3_KALBG	V5EWU2_KALBG	V5EMT3	V5EWU2	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.488
V5EMT3_KALBG	V5GQ30_KALBG	V5EMT3	V5GQ30	Uncharacterized protein.	TATA binding protein.	0.997
V5EPF4_KALBG	V5E8Y4_KALBG	V5EPF4	V5E8Y4	Uncharacterized protein.	TAF4 domain-containing protein.	0.997