13 items (Fonsecaea erecta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AYL99_11495	Uncharacterized protein. (195 aa)
	AYL99_10269	60S ribosomal protein L5. (300 aa)
	AYL99_09258	60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (188 aa)
	AYL99_09392	50S ribosomal protein L31e. (133 aa)
	AYL99_07542	60S ribosomal protein L18-A. (189 aa)
	AYL99_07476	60S ribosomal protein L30. (108 aa)
	AYL99_07702	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (187 aa)
	AYL99_06690	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (135 aa)
	AYL99_05236	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	AYL99_05272	60S ribosomal protein L7. (253 aa)
	AYL99_05632	60S ribosomal protein L35. (127 aa)
	AYL99_02262	60S ribosomal protein L32. (131 aa)
	AYL99_03030	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (143 aa)

Your Current Organism:

Fonsecaea erecta

NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AYL99_02262	AYL99_03030	A0A178ZVB2	A0A178ZWZ5	60S ribosomal protein L32.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
AYL99_02262	AYL99_05236	A0A178ZVB2	A0A178ZKB5	60S ribosomal protein L32.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
AYL99_02262	AYL99_05272	A0A178ZVB2	A0A178ZKE4	60S ribosomal protein L32.	60S ribosomal protein L7.	0.999
AYL99_02262	AYL99_05632	A0A178ZVB2	A0A178ZLG0	60S ribosomal protein L32.	60S ribosomal protein L35.	0.999
AYL99_02262	AYL99_06690	A0A178ZVB2	A0A178ZIC4	60S ribosomal protein L32.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
AYL99_02262	AYL99_07476	A0A178ZVB2	A0A178ZFY6	60S ribosomal protein L32.	60S ribosomal protein L30.	0.999
AYL99_02262	AYL99_07542	A0A178ZVB2	A0A178ZFN3	60S ribosomal protein L32.	60S ribosomal protein L18-A.	0.999
AYL99_02262	AYL99_07702	A0A178ZVB2	A0A178ZG48	60S ribosomal protein L32.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
AYL99_02262	AYL99_09258	A0A178ZVB2	A0A178Z8G8	60S ribosomal protein L32.	60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	0.999
AYL99_02262	AYL99_09392	A0A178ZVB2	A0A178ZAI6	60S ribosomal protein L32.	50S ribosomal protein L31e.	0.999
AYL99_02262	AYL99_10269	A0A178ZVB2	A0A178Z757	60S ribosomal protein L32.	60S ribosomal protein L5.	0.999
AYL99_02262	AYL99_11495	A0A178ZVB2	A0A178Z3S8	60S ribosomal protein L32.	Uncharacterized protein.	0.999
AYL99_03030	AYL99_02262	A0A178ZWZ5	A0A178ZVB2	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	60S ribosomal protein L32.	0.999
AYL99_03030	AYL99_05236	A0A178ZWZ5	A0A178ZKB5	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
AYL99_03030	AYL99_05272	A0A178ZWZ5	A0A178ZKE4	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	60S ribosomal protein L7.	0.999
AYL99_03030	AYL99_05632	A0A178ZWZ5	A0A178ZLG0	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	60S ribosomal protein L35.	0.999
AYL99_03030	AYL99_06690	A0A178ZWZ5	A0A178ZIC4	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
AYL99_03030	AYL99_07476	A0A178ZWZ5	A0A178ZFY6	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	60S ribosomal protein L30.	0.999
AYL99_03030	AYL99_07542	A0A178ZWZ5	A0A178ZFN3	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	60S ribosomal protein L18-A.	0.999
AYL99_03030	AYL99_07702	A0A178ZWZ5	A0A178ZG48	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999